dot-seuratInvalidate: .seuratInvalidate Removes seurat data from the input...

Description Usage Arguments Value

Description

.seuratInvalidate Removes seurat data from the input SingleCellExperiment object specified by the task in the Seurat workflow.

Usage

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.seuratInvalidate(
  inSCE,
  scaleData = TRUE,
  varFeatures = TRUE,
  PCA = TRUE,
  ICA = TRUE,
  tSNE = TRUE,
  UMAP = TRUE,
  clusters = TRUE
)

Arguments

inSCE

Input SingleCellExperiment object to remove Seurat data from.

scaleData

Remove scaled data from seurat. Default TRUE.

varFeatures

Remove variable features from seurat. Default TRUE.

PCA

Remove PCA from seurat. Default TRUE.

ICA

Remove ICA from seurat. Default TRUE.

tSNE

Remove tSNE from seurat. Default TRUE.

UMAP

Remove UMAP from seurat. Default TRUE.

clusters

Remove clusters from seurat. Default TRUE.

Value

Updated SingleCellExperiment object containing the Seurat object in the metadata slot with the data removed


singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.