combineSCE: Combine a list of SingleCellExperiment objects as one...

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

Combine a list of SingleCellExperiment objects as one SingleCellExperiment object

Usage

combineSCE(sceList, by.r, by.c, combined)

Arguments

sceList	A list contains SingleCellExperiment objects. Currently, combineSCE function only support combining SCE objects with assay in dgCMatrix format. It does not support combining SCE with assay in delayedArray format.
by.r	Specifications of the columns used for merging rowData. See 'Details'.
by.c	Specifications of the columns used for merging colData. See 'Details'.
combined	logical; if TRUE, it will combine the list of SingleCellExperiment objects. See 'Details'.

Value

A SingleCellExperiment object which combines all objects in sceList. The colData is merged.

Examples

combinedsce <- combineSCE(list(sce,sce), by.r = NULL, by.c = NULL, combined = TRUE)

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.