enrichRSCE: enrichR Given a list of genes this function runs the...

Description Usage Arguments Value Examples

View source: R/enrichRSCE.R

Description

enrichR Given a list of genes this function runs the enrichR() to perform Gene enrichment

Usage

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enrichRSCE(inSCE, glist, db = NULL)

Arguments

inSCE

Input SingleCellExperiment object.

glist

selected genes for enrichment analysis using enrichR(). Required

db

selected database name from the enrichR database list. if NULL then enrichR will be run on all the available databases on the enrichR database.

Value

enrichRSCE(): returns a data.frame of enrichment terms overlapping in the respective databases along with p-values, z-scores etc.,

Examples

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## Not run: 
enrichRSCE(mouseBrainSubsetSCE, "Cmtm5", "GO_Cellular_Component_2017")

## End(Not run)

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.