dot-sce2adata: Coverts SingleCellExperiment object from R to anndata.AnnData...
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
Description
Usage
Arguments
Value
Description
The AnnData object here can be saved to .h5ad file and read into Python
interactive console. Mostly used senario is when you want to apply
reticulated Python function, which only works with an anndata.AnnData object.
Usage
1
.sce2adata(SCE, useAssay = "counts")
Arguments
SCE
A SingleCellExperiment object.
useAssay
Character, default '"counts"'. The name of assay of
interests that will be set as the primary matrix of the output AnnData.
Available options can be listed by 'assayNames(SCE)'. Thee primary matrix
will be saved in 'adata$X', Other assays will be stored in 'adata$obsm'
together with the low-dimension representations (for now).
Value
A Python anndata.AnnData object
singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.
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Description Usage Arguments Value
Description
The AnnData object here can be saved to .h5ad file and read into Python interactive console. Mostly used senario is when you want to apply reticulated Python function, which only works with an anndata.AnnData object.
Usage
1 | .sce2adata(SCE, useAssay = "counts")
|
Arguments
SCE |
A SingleCellExperiment object. |
useAssay |
Character, default '"counts"'. The name of assay of interests that will be set as the primary matrix of the output AnnData. Available options can be listed by 'assayNames(SCE)'. Thee primary matrix will be saved in 'adata$X', Other assays will be stored in 'adata$obsm' together with the low-dimension representations (for now). |
Value
A Python anndata.AnnData object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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