dot-updateAssaySCE: .updateAssaySCE Update/Modify/Add an assay in the provided...

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

.updateAssaySCE Update/Modify/Add an assay in the provided SingleCellExperiment object from a Seurat object

Usage

.updateAssaySCE(
  inSCE,
  seuratObject,
  assaySlotSCE,
  seuratDataSlot = "counts",
  seuratAssaySlot = "RNA"
)

Arguments

inSCE	Input SingleCellExperiment object
seuratObject	Input Seurat object
assaySlotSCE	Selected assay to update in the input SingleCellExperiment object
seuratDataSlot	Selected data slot from the Seurat object. Default "counts".
seuratAssaySlot	Selected assay from Seurat object. Default "RNA".

Value

A SingleCellExperiment object with data from Seurat object appended to the assay slot.

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.