Files in snapCGH
Segmentation, normalisation and processing of aCGH data.

NAMESPACE
DESCRIPTION
src/header.h
src/optimizer.c
data/zero.length.distr.non.tiled.rda
data/non.zero.length.distr.non.tiled.rda
data/non.zero.length.distr.tiled.rda
data/zero.length.distr.tiled.rda
build/vignette.rds
vignettes/zoomGenome.jpg
vignettes/snapCGHguide.Rnw
vignettes/zoomChromosome.jpg
R/find.param.one.R R/findBreakPoints.R R/runDNAcopy.R R/classes.R R/simulateData.R R/find.param.three.R R/SegAnalysis.R R/processCGH.R R/fit.model.R R/hmm.R R/zoomFunctions.R R/MergeStates.R R/runBioHMM.R R/Viterbi.three.R R/convert.output.R R/chrominfo.Mb.R R/misc.R R/runGLAD.R R/readPositionalInfo.R R/Newplotting.R R/Viterbi.two.R R/find.param.two.R R/filter.R R/find.param.five.R R/IDProbes.R R/Viterbi.five.R R/find.param.four.R R/Viterbi.four.R R/runTilingArray.R man/findBreakPoints.Rd man/heatmapGenome.Rd man/cbind.Rd man/chrominfo.Mb.Rd man/non.zero.length.distr.tiled.Rd man/non.zero.length.distr.non.tiled.Rd man/LargeDataObject.Rd man/compareSegmentations.Rd man/runHMM.Rd man/removeByWeights.Rd man/find.param.one.Rd man/filter.Rd man/find.param.five.Rd man/runBioHMM.Rd man/read.clonesinfo.Rd man/SegList.Rd man/zero.length.distr.tiled.Rd man/find.param.three.Rd man/find.param.four.Rd man/processCGH.Rd man/zoomGenome.Rd man/dim.Rd man/runTilingArray.Rd man/readPositionalInfo.Rd man/mergeStates.Rd man/find.param.two.Rd man/Viterbi.five.Rd man/sim.structure.Rd man/zoomChromosome.Rd man/Viterbi.four.Rd man/runDNAcopy.Rd man/genomePlot.Rd man/dimnames.Rd man/IDProbes.Rd man/zero.length.distr.non.tiled.Rd man/log2ratios.Rd man/convert.output.Rd man/fit.model.Rd man/runGLAD.Rd man/imputeMissingValues.Rd man/Viterbi.three.Rd man/plotSegmentedGenome.Rd man/Viterbi.two.Rd
inst/testdata/10Mbslide29.gpr
inst/testdata/10Mbslide28.gpr
inst/testdata/cloneinfo.txt
inst/testdata/SpotTypes.txt
inst/testdata/targets.txt
inst/doc/snapCGHguide.Rnw
inst/doc/snapCGHguide.pdf inst/doc/snapCGHguide.R
snapCGH documentation built on Nov. 17, 2017, 10:51 a.m.