Files in snapCGH
Segmentation, normalisation and processing of aCGH data
NAMESPACE
DESCRIPTION
build/vignette.rds
src/optimizer.c
src/header.h
R/Viterbi.two.R
R/find.param.four.R
R/readPositionalInfo.R
R/hmm.R
R/chrominfo.Mb.R
R/misc.R
R/IDProbes.R
R/find.param.five.R
R/zoomFunctions.R
R/SegAnalysis.R
R/classes.R
R/findBreakPoints.R
R/Newplotting.R
R/fit.model.R
R/find.param.one.R
R/Viterbi.four.R
R/runBioHMM.R
R/runTilingArray.R
R/find.param.two.R
R/find.param.three.R
R/runDNAcopy.R
R/filter.R
R/simulateData.R
R/Viterbi.three.R
R/convert.output.R
R/processCGH.R
R/runGLAD.R
R/Viterbi.five.R
R/MergeStates.R
vignettes/snapCGHguide.Rnw
vignettes/zoomGenome.jpg
vignettes/zoomChromosome.jpg
man/findBreakPoints.Rd
man/runBioHMM.Rd
man/read.clonesinfo.Rd
man/SegList.Rd
man/fit.model.Rd
man/find.param.one.Rd
man/removeByWeights.Rd
man/zoomChromosome.Rd
man/Viterbi.five.Rd
man/convert.output.Rd
man/dimnames.Rd
man/Viterbi.two.Rd
man/find.param.two.Rd
man/readPositionalInfo.Rd
man/imputeMissingValues.Rd
man/sim.structure.Rd
man/plotSegmentedGenome.Rd
man/log2ratios.Rd
man/Viterbi.three.Rd
man/filter.Rd
man/cbind.Rd
man/zoomGenome.Rd
man/runDNAcopy.Rd
man/LargeDataObject.Rd
man/processCGH.Rd
man/find.param.four.Rd
man/runGLAD.Rd
man/genomePlot.Rd
man/find.param.five.Rd
man/Viterbi.four.Rd
man/runHMM.Rd
man/runTilingArray.Rd
man/find.param.three.Rd
man/IDProbes.Rd
man/heatmapGenome.Rd
man/mergeStates.Rd
man/chrominfo.Mb.Rd
man/compareSegmentations.Rd
man/dim.Rd
inst/doc/snapCGHguide.Rnw
inst/doc/snapCGHguide.R
inst/doc/snapCGHguide.pdf
inst/extdata/zero.length.distr.non.tiled.rds
inst/extdata/non.zero.length.distr.non.tiled.rds
inst/extdata/zero.length.distr.tiled.rds
inst/extdata/non.zero.length.distr.tiled.rds
inst/testdata/cloneinfo.txt
inst/testdata/targets.txt
inst/testdata/10Mbslide28.gpr
inst/testdata/10Mbslide29.gpr
inst/testdata/SpotTypes.txt
