zoomGenome: Interactive plot of the whole genome
In snapCGH: Segmentation, normalisation and processing of aCGH data
Description
Usage
Arguments
Details
Author(s)
View source: R/zoomFunctions.R
Description
Plot splitting the screen into two. The top windows displays the
entire genome, whilst the bottom plots a single chromosome. The plot
is interactive allowing the user to click on a chromosome in the upper
plot and have it displayed below. Clicking to either side of the plot borders
ends the interactivity.
Usage
1
zoomGenome(..., array = 1, colors = NULL, chrominfo = chrominfo.Mb)
Arguments
...
Objects of type SegList
array
Specify which array should be plotted.
colors
Vector specify the colors for each of the SegLists
chrominfo
chromosomal information associated with the mapping of the data.
Details
If colors is unspecified then all objects passed to this function will
be plotted in blue. Since this makes it quite hard to tell which is
which it is highly recommended to specify the colors vector if more
than one object is being passe to this function.
Author(s)
Mike Smith
snapCGH documentation built on Nov. 8, 2020, 5:31 p.m.
R Package Documentation
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Description Usage Arguments Details Author(s)
View source: R/zoomFunctions.R
Description
Plot splitting the screen into two. The top windows displays the entire genome, whilst the bottom plots a single chromosome. The plot is interactive allowing the user to click on a chromosome in the upper plot and have it displayed below. Clicking to either side of the plot borders ends the interactivity.
Usage
1 | zoomGenome(..., array = 1, colors = NULL, chrominfo = chrominfo.Mb)
|
Arguments
... |
Objects of type |
array |
Specify which array should be plotted. |
colors |
Vector specify the colors for each of the SegLists |
chrominfo |
chromosomal information associated with the mapping of the data. |
Details
If colors is unspecified then all objects passed to this function will be plotted in blue. Since this makes it quite hard to tell which is which it is highly recommended to specify the colors vector if more than one object is being passe to this function.
Author(s)
Mike Smith
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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