readPositionalInfo: readPositionalInfo
In snapCGH: Segmentation, normalisation and processing of aCGH data
Description
This function automatically inserts information about the chromosomal
positional of a clone into the \$genes matrix of an RGList or MAList.
This information is used in all the available segmentation methods as
well as many of the plotting functions available in snapCGH.
Usage
1
readPositionalInfo(input, source, path = NULL)
Arguments
input
An object of class RGList or
MAList
source
Defines which platform or technology this data was
produced on. Currently supported options are: "aglient",
"bluefuse", "nimblegen". This list will be expanded in time.
path
Optional parameter to specify where the original data is
stored. Defaults to the current working directory. This option is
only required for reading "bluefuse" data at the moment, as
chromosome information isn't read by limma as default.
snapCGH documentation built on Nov. 8, 2020, 5:31 p.m.
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Description
This function automatically inserts information about the chromosomal positional of a clone into the \$genes matrix of an RGList or MAList. This information is used in all the available segmentation methods as well as many of the plotting functions available in snapCGH.
Usage
1 | readPositionalInfo(input, source, path = NULL)
|
Arguments
input |
An object of class |
source |
Defines which platform or technology this data was produced on. Currently supported options are: "aglient", "bluefuse", "nimblegen". This list will be expanded in time. |
path |
Optional parameter to specify where the original data is stored. Defaults to the current working directory. This option is only required for reading "bluefuse" data at the moment, as chromosome information isn't read by limma as default. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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