runTilingArray: Results of segmenting an MAList data object using the Picard...

In snapCGH: Segmentation, normalisation and processing of aCGH data

Description

Wrapper calling the Tiling Array segmentation algorithm on an MAList object. This function requires the library DNAcopy to be loaded.

Usage

  runTilingArray(input, maxSeg = 5, maxk = 200, criteria = "BIC")

Arguments

input	An object of class MAList or SegList
maxSeg	integer of length 1, maximum number of segments (= 1 + maximum number of change points)
maxk	integer of length 1, maximum length of a single segment
criteria	Criteria for model selection. Options are "none", "AIC" and "BIC" (default)

Value

The function returns an object of class SegList

Author(s)

Mike Smith

See Also

segment MAList runHomHMM runGLAD SegList

snapCGH documentation built on Nov. 8, 2020, 5:31 p.m.