test_differential_cellularity_: Get differential composition information to a tibble using...

In tidybulk: Brings transcriptomics to the tidyverse

Description

Get differential composition information to a tibble using edgeR.

Usage

test_differential_cellularity_(
  .data,
  .formula,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL,
  method = "cibersort",
  reference = X_cibersort,
  significance_threshold = 0.05,
  ...
)

Arguments

.data	A tibble
.formula	a formula with no response variable, referring only to numeric variables
.sample	The name of the sample column
.transcript	The name of the transcript/gene column
.abundance	The name of the transcript/gene abundance column
method	A string character. Either "edgeR_quasi_likelihood" (i.e., QLF), "edgeR_likelihood_ratio" (i.e., LRT)
reference	A data frame. The transcript/cell_type data frame of integer transcript abundance
significance_threshold	A real between 0 and 1

Value

A tibble with edgeR results

tidybulk documentation built on April 7, 2021, 6 p.m.