beadcount: Creates matrix of beacounts from minfi data.
In wateRmelon: Illumina 450 methylation array normalization and metrics
Description
Usage
Arguments
Value
Note
Author(s)
References
Description
Creates matrix of beacounts from data read in using the minfi package. NAs represent probes with beadcount <3. An Extended RG Channel Set is required for this function to work.
Usage
1
beadcount(x)
Arguments
x
450K methylation data read in using minfi to create an Extended RG Channel Set
Value
A matrix of bead counts with bead counts <3 represented by NA for use in the pfilter function for quality control
Note
The beadcount function is internal to the pfilter function
Author(s)
Ruth.Pidsley@kcl.ac.uk
References
[1] Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC:
A data-driven approach to preprocessing Illumina 450K methylation
array data (submitted)
wateRmelon documentation built on Nov. 8, 2020, 7:47 p.m.
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Description Usage Arguments Value Note Author(s) References
Description
Creates matrix of beacounts from data read in using the minfi package. NAs represent probes with beadcount <3. An Extended RG Channel Set is required for this function to work.
Usage
1 | beadcount(x)
|
Arguments
x |
450K methylation data read in using minfi to create an Extended RG Channel Set |
Value
A matrix of bead counts with bead counts <3 represented by NA for use in the pfilter function for quality control
Note
The beadcount function is internal to the pfilter function
Author(s)
Ruth.Pidsley@kcl.ac.uk
References
[1] Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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