melon: Small MethyLumi data set for examples and testing

In wateRmelon: Illumina 450 methylation array normalization and metrics

Description

This object was derived using methylumiR on an edited GenomeStudio file containing a small subset of features. It works with all of the wateRmelon package beta functions (see dasen and metrics (see genki, seabi, and dmrse_col) except for swan.

Usage

data(melon)

Format

MethyLumiSet with assayData containing 3363 features, 12 samples

Source

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)

Examples

library(methylumi)
data(melon)
boxplot(log(methylated(melon)), las=2)
## maybe str(melon) ; plot(melon) ...

wateRmelon documentation built on Nov. 8, 2020, 7:47 p.m.