BDgraph: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

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Provides statistical tools for Bayesian structure learning in undirected graphical models with both continuous and discrete variables.

Author
Abdolreza Mohammadi and Ernst Wit
Date of publication
2016-11-15 07:16:45
Maintainer
Abdolreza Mohammadi <a.mohammadi@rug.nl>
License
GPL (>= 3)
Version
2.30
URLs

View on CRAN

Man pages

bdgraph
Search algorithm in graphical models
BDgraph-internal
Internal BDgraph functions and datasets
bdgraph.npn
Nonparametric transfer
BDgraph-package
Bayesian Structure Learning in Graphical Models
bdgraph.sim
Synthetic graph data generator
bdgraph.ts
Search algorithm in time series graphical models
compare
Comparing the results
geneExpression
Human gene expression dataset
gnorm
Log of the normalizing constant of G-Wishart distribution
pgraph
Posterior probabilities of the graphs
plinks
Estimated posterior link probabilities
plot.bdgraph
Plot function for 'S3' class '"bdgraph"'
plotcoda
Convergence plot
plotroc
ROC plot
plot.sim
Plot function for 'S3' class '"sim"'
print.bdgraph
Print function for 'S3' class '"bdgraph"'
print.sim
Print function for 'S3' class '"sim"'
rcwish
Sampling from Complex Wishart distribution
rgcwish
Sampling from complex G-Wishart distribution
rgwish
Sampling from G-Wishart distribution
rwish
Sampling from Wishart distribution
select
Graph selection
summary.bdgraph
Summary function for 'S3' class '"bdgraph"'
surveyData
Labor force survey data
traceplot
Trace plot of graph size

Files in this package

BDgraph
BDgraph/src
BDgraph/src/gm_rj.cpp
BDgraph/src/Makevars
BDgraph/src/copula.cpp
BDgraph/src/gcgm_DMH.cpp
BDgraph/src/rgwish.h
BDgraph/src/ggm_bd.cpp
BDgraph/src/bd_for_ts.cpp
BDgraph/src/rgwish.cpp
BDgraph/src/matrix.cpp
BDgraph/src/MyLapack.cpp
BDgraph/src/MyLapack.h
BDgraph/src/copula.h
BDgraph/src/gcgm_bd.cpp
BDgraph/src/Makevars.win
BDgraph/src/ggm_DMH.cpp
BDgraph/src/matrix.h
BDgraph/NAMESPACE
BDgraph/NEWS
BDgraph/data
BDgraph/data/surveyData.RData
BDgraph/data/geneExpression.RData
BDgraph/R
BDgraph/R/select.R
BDgraph/R/rgwish.R
BDgraph/R/rgcwish.R
BDgraph/R/bdgraph.R
BDgraph/R/plotcoda.R
BDgraph/R/bdgraph.ts.R
BDgraph/R/plinks.R
BDgraph/R/gnorm.R
BDgraph/R/traceplot.R
BDgraph/R/pgraph.R
BDgraph/R/rwish.R
BDgraph/R/compare.R
BDgraph/R/rcwish.R
BDgraph/R/bdgraph.npn.R
BDgraph/R/bdgraph.sim.R
BDgraph/R/plotroc.R
BDgraph/MD5
BDgraph/DESCRIPTION
BDgraph/man
BDgraph/man/BDgraph-package.Rd
BDgraph/man/traceplot.Rd
BDgraph/man/print.bdgraph.Rd
BDgraph/man/print.sim.Rd
BDgraph/man/rgwish.Rd
BDgraph/man/plot.bdgraph.Rd
BDgraph/man/plotcoda.Rd
BDgraph/man/bdgraph.sim.Rd
BDgraph/man/plotroc.Rd
BDgraph/man/plinks.Rd
BDgraph/man/surveyData.Rd
BDgraph/man/rgcwish.Rd
BDgraph/man/plot.sim.Rd
BDgraph/man/bdgraph.npn.Rd
BDgraph/man/compare.Rd
BDgraph/man/pgraph.Rd
BDgraph/man/bdgraph.ts.Rd
BDgraph/man/summary.bdgraph.Rd
BDgraph/man/rcwish.Rd
BDgraph/man/geneExpression.Rd
BDgraph/man/BDgraph-internal.Rd
BDgraph/man/gnorm.Rd
BDgraph/man/select.Rd
BDgraph/man/bdgraph.Rd
BDgraph/man/rwish.Rd