Trace plot of graph size

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Description

Trace plot for graph size for the objects of S3 class "bdgraph", from function bdgraph. It is a tool for monitoring the convergence of the sampling algorithms, BDMCMC and RJMCMC.

Usage

1
 traceplot ( bdgraph.obj, acf = FALSE, pacf = FALSE, main = NULL, ... ) 

Arguments

bdgraph.obj

An object of S3 class "bdgraph", from function bdgraph.

acf

Visualize the autocorrelation functions for graph size. The default is FALSE.

pacf

Visualize the partial autocorrelations for graph size. The default is FALSE.

main

Graphical parameter (see plot).

...

System reserved (no specific usage).

Author(s)

Abdolreza Mohammadi and Ernst Wit

References

Mohammadi, A. and E. Wit (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138

Mohammadi, A. and E. Wit (2015). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, arXiv:1501.05108

Mohammadi, A., F. Abegaz Yazew, E. van den Heuvel, and E. Wit (2016). Bayesian modelling of Dupuytren disease by using Gaussian copula graphical models, Journal of the Royal Statistical Society: Series C

See Also

bdgraph

Examples

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## Not run: 
# Generating multivariate normal data from a 'random' graph
data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )
   
bdgraph.obj <- bdgraph( data = data.sim, iter = 10000, burnin = 0, save.all = TRUE )
   
traceplot( bdgraph.obj )
   
traceplot( bdgraph.obj, acf = TRUE, pacf = TRUE )

## End(Not run)