summary.bdgraph: Summary function for 'S3' class "'bdgraph'"

In BDgraph: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Summary function for S3 class "bdgraph"

Description

Provides a summary of the results for function bdgraph.

Usage

## S3 method for class 'bdgraph'
summary( object, round = 2, vis = TRUE, ... )

Arguments

object	object of S3 class "bdgraph", from function bdgraph.
round	value for rounding all probabilities to the specified number of decimal places.
vis	visualize the results.
...	additional plotting parameters for the case vis = TRUE. See plot.graph.

Value

selected_g	adjacency matrix corresponding to the selected graph which has the highest posterior probability.
p_links	upper triangular matrix corresponding to the posterior probabilities of all possible links.
K_hat	estimated precision matrix.

Author(s)

Reza Mohammadi [e-mail] and Ernst Wit

References

Mohammadi, R. and Wit, E. C. (2019). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, Journal of Statistical Software, 89(3):1-30, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.18637/jss.v089.i03")}

See Also

bdgraph, bdgraph.mpl

Examples

## Not run: 
# Generating multivariate normal data from a 'random' graph
data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )
   
bdgraph.obj <- bdgraph( data = data.sim )
   
summary( bdgraph.obj )
   
bdgraph.obj <- bdgraph( data = data.sim, save = TRUE )
   
summary( bdgraph.obj )
   
summary( bdgraph.obj, vis = FALSE )

## End(Not run)

BDgraph documentation built on Sept. 11, 2024, 5:30 p.m.