geneExpression: Human gene expression dataset

In BDgraph: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Human gene expression dataset

Description

The dataset contains human gene expression of 100 transcripts (with unique Illumina TargetID) measured on 60 unrelated individuals.

Usage

 data( geneExpression ) 

Format

The format is a matrix with 60 rows (number of individuals) and 100 column (number of transcripts).

References

Bhadra, A. and Mallick, B. K. (2013). Joint High Dimensional Bayesian Variable and Covariance Selection with an Application to eQTL Analysis, Biometrics, 69(2):447-457, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1111/biom.12021")}

Mohammadi, A. and Wit, E. C. (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1214/14-BA889")}

Examples

data( geneExpression )

dim( geneExpression )
head( geneExpression )

BDgraph documentation built on Sept. 11, 2024, 5:30 p.m.