select: Graph selection

In BDgraph: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Graph selection

Description

Provides the selected graph which, based on input, could be a graph with links for which their estimated posterior probabilities are greater than 0.5 (default) or a graph with the highest posterior probability; see examples.

Usage

 select( bdgraph.obj, cut = NULL, vis = FALSE ) 

Arguments

bdgraph.obj	matrix in which each element response to the weight of the links. It can be an object of S3 class "bdgraph", from function bdgraph. It can be an object of S3 class "ssgraph", from the function ssgraph::ssgraph() of R package ssgraph::ssgraph().
cut	threshold for including the links in the selected graph based on the estimated posterior probabilities of the links; see the examples.
vis	visualize the selected graph structure.

Value

An adjacency matrix corresponding to the selected graph.

Author(s)

Reza Mohammadi [e-mail] and Ernst Wit

References

Mohammadi, R. and Wit, E. C. (2019). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, Journal of Statistical Software, 89(3):1-30, doi: 10.18637/jss.v089.i03

Mohammadi, A. and Wit, E. C. (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138, doi: 10.1214/14-BA889

Mohammadi, R., Massam, H. and Letac, G. (2021). Accelerating Bayesian Structure Learning in Sparse Gaussian Graphical Models, Journal of the American Statistical Association, doi: 10.1080/01621459.2021.1996377

Dobra, A. and Mohammadi, R. (2018). Loglinear Model Selection and Human Mobility, Annals of Applied Statistics, 12(2):815-845, doi: 10.1214/18-AOAS1164

Mohammadi, A. et al (2017). Bayesian modelling of Dupuytren disease by using Gaussian copula graphical models, Journal of the Royal Statistical Society: Series C, 66(3):629-645, doi: 10.1111/rssc.12171

See Also

bdgraph, bdgraph.mpl

Examples

## Not run: 
# Generating multivariate normal data from a 'random' graph
data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )
  
bdgraph.obj <- bdgraph( data = data.sim )
   
select( bdgraph.obj )
  
bdgraph.obj <- bdgraph( data = data.sim, save = TRUE )
  
select( bdgraph.obj )
  
select( bdgraph.obj, cut = 0.5, vis = TRUE )

## End(Not run)

BDgraph documentation built on Dec. 28, 2022, 1:54 a.m.