Files in BayesianTools

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

NEWS.md R/RcppExports.R R/marginalLikelihood.R R/diagnosticsGelman.R R/mcmcDEzs.R R/classBayesianOutput.R R/BayesianTools.R R/proposalGenerator.R R/classPosterior.R R/WAIC.R R/blockUpdate.R R/utils-Numerics.R R/plotSensitivityOAT.R R/classLikelihood.R R/utilsFrancesco.R R/DIC.R R/plotMarginals.R R/mcmcConfidence.R R/classPrior.R R/mcmcRun.R R/classMcmcSampler.R R/getVolume.R R/classMcmcSamplerList.R R/GOF.R R/mcmcDREAMzs.R R/plotCorrelationDensity.r R/mcmcDREAM.R R/benchmark.R R/plotDiagnostic.R R/mcmcMultipleChains.R R/VSEM.R R/mcmcTwalk.R R/classSmcSampler.R R/MAP.R R/classBayesianSetup.R R/BayesianSetupGenerateParallel.R R/mcmcSamplerAutomatic.R R/classSMCSamplerList.R R/plotTrace.R R/mcmcFrancesco.R R/mcmcDREAM_helperFunctions.R R/mcmcDE.R R/SMC.R R/mcmcTwalk_helperFunctions.R R/convertCoda.R R/mcmcMetropolis.R R/importPackages.R R/testFunctions.R R/plotTimeSeries.R R/utils.R R/codaFunctions.R R/SBC.R inst/doc/InterfacingAModel.R inst/doc/BayesianTools.R inst/doc/BayesianTools.Rmd inst/doc/InterfacingAModel.Rmd inst/examples/testLinearModel.R inst/examples/marginalLikelihoodHelp.R inst/examples/createPrior.R inst/examples/mcmcRun.R inst/examples/bridgesampleHelp.R inst/examples/marginalPlotHelp.R inst/examples/tracePlotHelp.R inst/examples/getVolume.R inst/examples/proposalGeneratorHelp.R inst/examples/GOF.R inst/examples/SMCHelp.R inst/examples/getSampleHelp.R inst/examples/classBayesianSetup.R inst/examples/generateParallelExecuter.R inst/examples/VSEMHelp.R inst/examples/plotSensitivityHelp.R inst/examples/DEfamilyHelp.R inst/examples/WAICHelp.R inst/examples/MetropolisHelp.R inst/examples/generateTestDensityMultiNormalHelp.R inst/examples/correlationPlotHelp.R inst/examples/plotTimeSeriesHelp.R inst/examples/plotTimeSeriesResultsHelp.R inst/examples/plotDiagnosticHelp.R tests/testthat.R tests/testthat/test-tracePlot.R tests/testthat/test-utils-Numerics.R tests/testthat/test-samplers.R tests/testthat/test-marginalPlot.R tests/testthat/test-createBayesianSetup.R tests/testthat/test-startValues.R tests/testthat/test-utilities.R tests/testthat/test-getSample.R tests/testthat/test-settingsDefault.R tests/testthat/test-marginalLikelihood.R tests/testthat/test-plotTimeSeriesResults.R tests/testthat/test-correlationPlot.R tests/testthat/test-runMCMC.R tests/testthat/testFunctionalities.R tests/testthat/test-infinity.R tests/testthat/test-plotDiagnostic.R vignettes/BayesianTools.Rmd vignettes/InterfacingAModel.Rmd man/likelihoodAR1.Rd man/logSumExp.Rd man/betaFun.Rd man/testDensityNormal.Rd man/VSEMcreateLikelihood.Rd man/Twalk.Rd man/DEzs.Rd man/getDharmaResiduals.Rd man/getVolume.Rd man/createPosterior.Rd man/plotSensitivity.Rd man/BayesianTools.Rd man/setupStartProposal.Rd man/DR.Rd man/testLinearModel.Rd man/correctThin.Rd man/marginalLikelihood.Rd man/applySettingsDefault.Rd man/plotTimeSeriesResults.Rd man/convertCoda.Rd man/marginalPlot.Rd man/sampleMetropolis.Rd man/getPossibleSamplerTypes.Rd man/DREAM.Rd man/tracePlot.Rd man/testDensityBanana.Rd man/generateParallelExecuter.Rd man/propFun.Rd man/sumSquare.Rd man/createBayesianSetup.Rd man/sampleEquallySpaced.Rd man/createMcmcSamplerList.Rd man/VSEMcreatePAR.Rd man/Gfun.Rd man/getRmvnorm.Rd man/TwalkMove.Rd man/rescale.Rd man/stopParallel.Rd man/likelihoodIidNormal.Rd man/plotTimeSeries.Rd man/mergeChains.Rd man/gelmanDiagnostics.Rd man/marginalPlotViolin.Rd man/WAIC.Rd man/createProposalGenerator.Rd man/getSetup.Rd man/MAP.Rd man/makeObjectClassCodaMCMC.Rd man/DRAM.Rd man/DIC.Rd man/checkBayesianSetup.Rd man/DE.Rd man/createPriorDensity.Rd man/getCredibleIntervals.Rd man/testDensityInfinity.Rd man/plotDiagnostic.Rd man/bridgesample.Rd man/scaleMatrix.Rd man/calibrationTest.Rd man/testDensityGelmanMeng.Rd man/AdaptpCR.Rd man/generateTestDensityMultiNormal.Rd man/getPanels.Rd man/package-deprecated.Rd man/createUniformPrior.Rd man/vsemC.Rd man/VSEMgetDefaults.Rd man/createLikelihood.Rd man/DREAMzs.Rd man/Twalksteps.Rd man/getBlockSettings.Rd man/createBetaPrior.Rd man/createTruncatedNormalPrior.Rd man/AM.Rd man/generateCRvalues.Rd man/marginalPlotDensity.Rd man/testDensityMultiNormal.Rd man/getPredictiveDistribution.Rd man/createPrior.Rd man/createSmcSamplerList.Rd man/thinMatrix.Rd man/updateGroups.Rd man/runMCMC.Rd man/M.Rd man/factorMatrice.Rd man/plotTimeSeriesResiduals.Rd man/updateProposalGenerator.Rd man/getSample.Rd man/Metropolis.Rd man/getPredictiveIntervals.Rd man/GOF.Rd man/correlationPlot.Rd man/smcSampler.Rd man/mcmcMultipleChains.Rd man/VSEM.Rd man/metropolisRatio.Rd man/getBlock.Rd man/combineChains.Rd