Files in BayesianTools
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/marginalLikelihood.R
R/diagnosticsGelman.R
R/mcmcDEzs.R
R/classBayesianOutput.R
R/BayesianTools.R
R/proposalGenerator.R
R/classPosterior.R
R/WAIC.R
R/blockUpdate.R
R/utils-Numerics.R
R/plotSensitivityOAT.R
R/classLikelihood.R
R/utilsFrancesco.R
R/DIC.R
R/plotMarginals.R
R/mcmcConfidence.R
R/classPrior.R
R/mcmcRun.R
R/classMcmcSampler.R
R/getVolume.R
R/classMcmcSamplerList.R
R/GOF.R
R/mcmcDREAMzs.R
R/plotCorrelationDensity.r
R/mcmcDREAM.R
R/benchmark.R
R/plotDiagnostic.R
R/mcmcMultipleChains.R
R/VSEM.R
R/mcmcTwalk.R
R/classSmcSampler.R
R/MAP.R
R/classBayesianSetup.R
R/BayesianSetupGenerateParallel.R
R/mcmcSamplerAutomatic.R
R/classSMCSamplerList.R
R/plotTrace.R
R/mcmcFrancesco.R
R/mcmcDREAM_helperFunctions.R
R/mcmcDE.R
R/SMC.R
R/mcmcTwalk_helperFunctions.R
R/convertCoda.R
R/mcmcMetropolis.R
R/importPackages.R
R/testFunctions.R
R/plotTimeSeries.R
R/utils.R
R/codaFunctions.R
R/SBC.R
src/vsem.cpp
src/RcppExports.cpp
src/init.c
inst/doc/InterfacingAModel.R
inst/doc/BayesianTools.R
inst/doc/BayesianTools.Rmd
inst/doc/InterfacingAModel.html
inst/doc/InterfacingAModel.Rmd
inst/doc/BayesianTools.html
inst/examples/testLinearModel.R
inst/examples/marginalLikelihoodHelp.R
inst/examples/createPrior.R
inst/examples/mcmcRun.R
inst/examples/bridgesampleHelp.R
inst/examples/marginalPlotHelp.R
inst/examples/tracePlotHelp.R
inst/examples/getVolume.R
inst/examples/proposalGeneratorHelp.R
inst/examples/GOF.R
inst/examples/SMCHelp.R
inst/examples/getSampleHelp.R
inst/examples/classBayesianSetup.R
inst/examples/generateParallelExecuter.R
inst/examples/VSEMHelp.R
inst/examples/plotSensitivityHelp.R
inst/examples/DEfamilyHelp.R
inst/examples/WAICHelp.R
inst/examples/MetropolisHelp.R
inst/examples/generateTestDensityMultiNormalHelp.R
inst/examples/correlationPlotHelp.R
inst/examples/plotTimeSeriesHelp.R
inst/examples/plotTimeSeriesResultsHelp.R
inst/examples/plotDiagnosticHelp.R
build/vignette.rds
tests/testthat.R
tests/testthat/test-tracePlot.R
tests/testthat/test-utils-Numerics.R
tests/testthat/test-samplers.R
tests/testthat/test-marginalPlot.R
tests/testthat/test-createBayesianSetup.R
tests/testthat/test-startValues.R
tests/testthat/test-utilities.R
tests/testthat/test-getSample.R
tests/testthat/test-settingsDefault.R
tests/testthat/test-marginalLikelihood.R
tests/testthat/test-plotTimeSeriesResults.R
tests/testthat/test-correlationPlot.R
tests/testthat/test-runMCMC.R
tests/testthat/testFunctionalities.R
tests/testthat/test-infinity.R
tests/testthat/test-plotDiagnostic.R
vignettes/BayesianTools.Rmd
vignettes/InterfacingAModel.Rmd
man/likelihoodAR1.Rd
man/logSumExp.Rd
man/betaFun.Rd
man/testDensityNormal.Rd
man/VSEMcreateLikelihood.Rd
man/Twalk.Rd
man/DEzs.Rd
man/getDharmaResiduals.Rd
man/getVolume.Rd
man/createPosterior.Rd
man/plotSensitivity.Rd
man/BayesianTools.Rd
man/setupStartProposal.Rd
man/DR.Rd
man/testLinearModel.Rd
man/correctThin.Rd
man/marginalLikelihood.Rd
man/applySettingsDefault.Rd
man/plotTimeSeriesResults.Rd
man/convertCoda.Rd
man/marginalPlot.Rd
man/sampleMetropolis.Rd
man/getPossibleSamplerTypes.Rd
man/DREAM.Rd
man/tracePlot.Rd
man/testDensityBanana.Rd
man/generateParallelExecuter.Rd
man/propFun.Rd
man/sumSquare.Rd
man/createBayesianSetup.Rd
man/sampleEquallySpaced.Rd
man/createMcmcSamplerList.Rd
man/VSEMcreatePAR.Rd
man/Gfun.Rd
man/getRmvnorm.Rd
man/TwalkMove.Rd
man/rescale.Rd
man/stopParallel.Rd
man/likelihoodIidNormal.Rd
man/plotTimeSeries.Rd
man/mergeChains.Rd
man/gelmanDiagnostics.Rd
man/marginalPlotViolin.Rd
man/WAIC.Rd
man/createProposalGenerator.Rd
man/getSetup.Rd
man/MAP.Rd
man/makeObjectClassCodaMCMC.Rd
man/DRAM.Rd
man/DIC.Rd
man/checkBayesianSetup.Rd
man/DE.Rd
man/createPriorDensity.Rd
man/getCredibleIntervals.Rd
man/testDensityInfinity.Rd
man/plotDiagnostic.Rd
man/bridgesample.Rd
man/scaleMatrix.Rd
man/calibrationTest.Rd
man/testDensityGelmanMeng.Rd
man/AdaptpCR.Rd
man/generateTestDensityMultiNormal.Rd
man/getPanels.Rd
man/package-deprecated.Rd
man/createUniformPrior.Rd
man/vsemC.Rd
man/VSEMgetDefaults.Rd
man/createLikelihood.Rd
man/DREAMzs.Rd
man/Twalksteps.Rd
man/getBlockSettings.Rd
man/createBetaPrior.Rd
man/createTruncatedNormalPrior.Rd
man/AM.Rd
man/generateCRvalues.Rd
man/marginalPlotDensity.Rd
man/testDensityMultiNormal.Rd
man/getPredictiveDistribution.Rd
man/createPrior.Rd
man/createSmcSamplerList.Rd
man/thinMatrix.Rd
man/updateGroups.Rd
man/runMCMC.Rd
man/M.Rd
man/factorMatrice.Rd
man/plotTimeSeriesResiduals.Rd
man/updateProposalGenerator.Rd
man/getSample.Rd
man/Metropolis.Rd
man/getPredictiveIntervals.Rd
man/GOF.Rd
man/correlationPlot.Rd
man/smcSampler.Rd
man/mcmcMultipleChains.Rd
man/VSEM.Rd
man/metropolisRatio.Rd
man/getBlock.Rd
man/combineChains.Rd
