aggregate_note: Aggregate Contents of a Note

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

When using atomized notes, this function 'pastes' back the different sections together in the intended order. Preselected lemmas are marked, along with those for which thr CUI is in the list of interest.

Usage

aggregate_note(selected_doc_id, annotations, cui_elements)

Arguments

selected_doc_id	Document ID for the note to which the sentence belongs.
annotations	NLP annotations dataframe.
cui_elements	Vector of UMLS concept unique identifier (CUI) elements derived from the search query.

Value

Aggregated note in one text string.

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.