db_upload: Upload Annotations

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

Uploads NLP annotations for one patient.

Usage

db_upload(
  uri_fun,
  user,
  password,
  host,
  port,
  database,
  patient_id,
  annotations
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
port	MongoDB port.
database	MongoDB database name.
patient_id	Patient ID.
annotations	NLP annotations.

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.