mongo_connect: Connect to MongoDB

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

Basic function used by CEDARS to connect to MongoDB instance. Wraps mongo() from mongolite.

Usage

mongo_connect(uri_fun, user, password, host, port, database, mongo_collection)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
port	MongoDB port.
database	MongoDB database name.
mongo_collection	MongoDB collection; if NA, will connect to DB itself.

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.