populate_notes: Prepare Database for Patient Notes

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

Sets up the 'NOTES' collection which will hold original EHR documents. Those notes can exist as complete documents (one doc per note) or in atomized form (several docs, each a subsection of one note).

Usage

populate_notes(uri_fun, user, password, host, port, database)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
port	MongoDB port.
database	MongoDB database name.

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.