API for Coxmos
Cox MultiBlock Survival

Global functions
Beran Man page Source code
CV Man page Source code
Csurv Man page Source code
NR Man page
PI Man page Source code
R2_indv Source code
RocFun Man page Source code
SURVCOMP_BRIER Source code
SURVCOMP_BRIER_LP Source code
XY.scale Source code
X_multiomic Man page
X_proteomic Man page
Y_multiomic Man page
Y_proteomic Man page
barplot.mean_performace2.0 Source code
boxplot.performance Source code
cenROC Man page Source code
cenROC_tryCatch Source code
check.cv.weights Source code
check.maxPredictors Source code
check.maxPredictors.cox Source code
check.mb.maxPredictors Source code
check.mb.ncomp Source code
check.ncomp Source code
checkColnamesIllegalChars Source code
checkColnamesIllegalChars.mb Source code
checkFoldRuns Source code
checkX.colnames Source code
checkX.colnames.mb Source code
checkXY.class Source code
checkXY.mb.class Source code
checkXY.rownames Source code
checkXY.rownames.mb Source code
checkY.colnames Source code
check_AUC_improvement_spls1 Source code
check_AUC_improvement_spls2 Source code
check_class Source code
check_min0_less1_variables Source code
check_min0_max1_variables Source code
comboplot.performance2.0 Source code
computeFirstModelSW Source code
cox Man page
cox.prediction Man page
coxEN Man page Source code
coxEN_class Source code
coxSW Man page Source code
coxSW_class Source code
cox_class Source code
coxweightplot.fromVector.Coxmos Source code
cv.coxEN Man page Source code
cv.coxEN_class Source code
cv.getScoreFromWeight Source code
cv.isb.splsdacox Man page Source code
cv.isb.splsdacox_dynamic_class Source code
cv.isb.splsdrcox Man page Source code
cv.isb.splsdrcox_class Source code
cv.isb.splsdrcox_dynamic_class Source code
cv.isb.splsdrcox_penalty Man page Source code
cv.isb.splsicox Man page Source code
cv.isb.splsicox_class Source code
cv.mb.splsdacox Man page
cv.mb.splsdrcox Man page
cv.sb.splsdacox Man page Source code
cv.sb.splsdacox_dynamic_class Source code
cv.sb.splsdrcox Man page Source code
cv.sb.splsdrcox_dynamic_class Source code
cv.sb.splsdrcox_penalty Man page Source code
cv.sb.splsdrcox_penalty_class Source code
cv.sb.splsicox Man page
cv.splsdacox Man page Source code
cv.splsdacox_dynamic_class Source code
cv.splsdrcox Man page Source code
cv.splsdrcox_dynamic_class Source code
cv.splsdrcox_penalty Man page
cv.splsdrcox_penalty_class Source code Source code
cv.splsicox Man page
cv.splsicox_class Source code
deleteColumn Source code
deleteIllegalChars Source code
deleteNearZeroCoefficientOfVariation Man page Source code
deleteNearZeroCoefficientOfVariation.mb Man page Source code
deleteVariablesCox Source code
deleteZeroOrNearZeroVariance Man page Source code
deleteZeroOrNearZeroVariance.mb Man page Source code
deleteZeroVarianceVariables Source code
dnorkernel Man page Source code
eval_Coxmos_model_per_variable Man page
eval_Coxmos_model_per_variable.list Man page
eval_Coxmos_models Man page
evalplot_errorbar Source code
factorToBinary Man page Source code
getAUC_from_LP_2.0 Source code
getAUC_vector Source code
getAutoKM Man page
getAutoKM.list Man page
getCOMPLETE_BRIER Source code
getCOMPLETE_LP Source code
getCOMPLETE_LP_AUC Source code
getCutoffAutoKM Man page
getCutoffAutoKM.list Man page
getDesign.MB Man page
getEPV Man page Source code
getEPV.mb Man page Source code
getFAST_LP_AUC Source code
getIndividualCox Source code
getInfoCoxModel Source code
getMaxNPredictors Source code
getPvalFromCox Source code
getRealNameVarFromCoxModel Source code
getTestKM Man page
getTestKM.list Man page
getTimesVector Source code
gg_color_hue Source code
integ Man page Source code
is.binaryMatrix Source code
isInteraction Source code
isb.splsdacox Man page Source code
isb.splsdacox_dynamic_class Source code
isb.splsdrcox Man page Source code
isb.splsdrcox_class Source code
isb.splsdrcox_dynamic_class Source code
isb.splsdrcox_penalty Man page Source code
isb.splsicox Man page Source code
isb.splsicox_class Source code
ker_dis_i Man page Source code
kfunc Man page Source code
kfunction Man page Source code
lineplot.performace Source code
lineplot.performace2.0 Source code
loadingplot.Coxmos Man page Source code
loadingplot.fromVector.Coxmos Man page Source code
mb.splsdacox Man page
mb.splsdrcox Man page
muro Man page Source code
norm01 Man page Source code
nsROC_tryCatch Source code
plotZPH Source code
plot_Coxmos.MB.PLS.model Man page
plot_Coxmos.PLS.model Man page Source code
plot_PLS_Coxmos Man page Source code
plot_VAR_eval Source code
plot_cox.event Man page
plot_cox.event.list Man page
plot_divergent.biplot Man page Source code
plot_evaluation Man page Source code
plot_evaluation.list Man page Source code
plot_events Man page Source code
plot_forest Man page
plot_forest.list Man page
plot_multipleObservations.LP Man page
plot_multipleObservations.LP.list Man page
plot_observation.eventDensity Man page
plot_observation.eventHistogram Man page
plot_observation.pseudobeta Man page
plot_observation.pseudobeta.list Man page
plot_pls_1comp Source code
plot_proportionalHazard Man page
plot_proportionalHazard.list Man page
plot_pseudobeta Man page
plot_pseudobeta.list Man page
plot_time.list Man page Source code
pls2 Source code Source code
point.sd.mean_performace2.0 Source code
predict.Coxmos Man page Source code
predict_mixOmics.pls Source code Source code
print.Coxmos Man page Source code
prop.vector.density Source code
removeColumn Source code
removeInfoSurvivalModel Source code
removeNAorINFcoxmodel Source code
removeNonSignificativeCox Source code
retransformIllegalChars Source code
risksetROC_tryCatch Source code
round2any Source code
round2any.POSIXct Source code
round2any.difftime Source code
round2any.double Source code
round2any.integer Source code
round2any.numeric Source code
save_ggplot Man page Source code
save_ggplot_lst Man page Source code
sb.splsdacox Man page Source code
sb.splsdacox_dynamic_class Source code
sb.splsdrcox Man page Source code
sb.splsdrcox_dynamic_class Source code
sb.splsdrcox_penalty Man page
sb.splsdrcox_penalty_class Source code
sb.splsicox Man page Source code
smoothROCtime_tryCatch Source code
splitData_Iterations_Folds Source code
splitData_Iterations_Folds_indexes Source code
splsdacox Man page Source code
splsdacox_dynamic_class Source code
splsdrcox Man page Source code
splsdrcox_dynamic_class Source code
splsdrcox_penalty Man page
splsdrcox_penalty_class Source code Source code
splsicox Man page Source code
splsicox_class Source code
stepwise.coxph Source code
stop_quietly Source code
survivalROC_tryCatch Source code
timesAsumption_AUC_Eval Source code
transformIllegalChars Source code
w.starplot.Coxmos Man page Source code
wIQR Man page Source code
wbw Man page Source code
wquantile Man page Source code
wvar Man page Source code
Coxmos documentation built on April 4, 2025, 12:20 a.m.