API for Infusion
Inference Using Simulation
| Global functions | |
|---|---|
| ..densityMclust | Source code |
| ..shrink | Source code |
| ..simulate.gllimX | Source code |
| .Inf_palette | Source code |
| .MAF_batchsize_mem_hack | Source code |
| .MSL_update | Source code |
| .RMSEwrapper | Source code |
| .RMSEwrapper.SLik_j | Source code |
| .Rmixmodelize | Source code |
| .SLR | Source code |
| .ULI | Source code |
| .ad_hoc_opt | Source code |
| .any_mixmodCluster_issue | Source code |
| .any_mixmodCluster_w_retries_issue | Source code |
| .any_mixmodResult_issue | Source code |
| .apply_par_constraints_LOWUP | Source code |
| .apply_par_constraints_lowup | Source code |
| .as_cis4parm | Source code |
| .assign_Rmixmod | Source code |
| .assign_ci_info | Source code |
| .boo_SLik_joint | Source code |
| .boot.SLik_j | Source code |
| .calc_2Dprof_xyz | Source code |
| .calc_EI | Source code |
| .calc_all_MAFs | Source code |
| .calc_all_slices | Source code |
| .calc_ceil_size | Source code |
| .calc_filltop_weights | Source code |
| .calc_instr_densities | Source code |
| .calc_outsideness | Source code |
| .calc_pardens_thr_info | Source code |
| .calc_prof_coords | Source code |
| .check_data_post_boundaries | Source code |
| .check_identifiables | Source code |
| .check_importance_method | Source code |
| .check_logLs_input | Source code |
| .check_nb_cores | Source code |
| .check_surface_input | Source code |
| .close_cores | Source code |
| .condProfoutParMeans.gllim | Source code |
| .conditional_Rmixmod | Source code |
| .conditional_gllimobj | Source code |
| .conditional_mclust | Source code |
| .confintAll | Source code |
| .constrOptim | Source code |
| .data_autopsy | Source code |
| .default_build_model | Source code |
| .densityMclust | Source code |
| .densityMixmod | Source code |
| .design_MAF | Source code |
| .design_hidden_layers_MGM_like | Source code |
| .design_hidden_layers_PSM19 | Source code |
| .dlatent | Source code |
| .dlatent_1DP | Source code |
| .do_call_wrap | Source code |
| .ecdf_2lr | Source code |
| .eval_Sobs_densities | Source code |
| .extract_intervals | Source code |
| .fast_as.matrix.df | Source code |
| .fastai | Source code |
| .filled.contour.plot | Source code |
| .findConstraints | Source code |
| .fit_2lr | Source code |
| .fittedPars_plot_pars | Source code |
| .generateFileName | Source code |
| .get_best_mclust_by_IC | Source code |
| .get_best_mixmod_by_IC | Source code |
| .get_ci_info | Source code |
| .get_dens_from_GMM.Rmixmod | Source code |
| .get_dens_from_GMM.gllim | Source code |
| .get_densv | Source code |
| .get_gof_stats | Source code |
| .get_gradfn | Source code |
| .get_initParam | Source code |
| .get_init_from_hull | Source code |
| .get_instr_postdens | Source code |
| .get_mixModstrategy | Source code |
| .get_nbCluster_from_SLik | Source code |
| .get_py_MAF_handle | Source code |
| .get_reft_raw | Source code |
| .get_size_first_iter | Source code |
| .get_subrows_for_proj | Source code |
| .get_thr_info | Source code |
| .get_workflow_design | Source code |
| .get_workflow_design_2.1.112 | Source code |
| .get_workflow_design_2.1.162 | Source code |
| .get_workflow_design_2.1.75 | Source code |
| .get_workflow_design_2.1.87 | Source code |
| .gllim.condsimul.stats | Source code |
| .grad.dMixmod | Source code |
| .gridfn | Source code |
| .hessian.summLik | Source code |
| .inRstudio | Source code |
| .infer_LR_pvalue_from_EDF | Source code |
| .infer_SLik_joint | Source code |
| .infer_refDensity | Source code |
| .init_cores | Source code |
| .init_params_from_pardens | Source code |
| .inits_from_postdens | Source code |
| .is_clustering_suspect | Source code |
| .keras | Source code |
| .log10_1p | Source code |
| .logL.gllim | Source code |
| .lookup | Source code |
| .make_n | Source code |
| .makenewname | Source code |
| .marginalize_Rmixmod | Source code |
| .marginalize_mclust | Source code |
| .missing_forests | Source code |
| .mixmodCluster_w_retries | Source code |
| .newdata_from_pardens_clu_means | Source code |
| .optim_mlogL_newobs | Source code |
| .overcat | Source code |
| .par_RMSEwrapper | Source code |
| .paral_calc_prof_coords | Source code |
| .platent | Source code |
| .platent_1DP | Source code |
| .plot_cloud | Source code |
| .plot_itself | Source code |
| .predictWrap | Source code |
| .predict_MAF | Source code |
| .predict_SLik_j_mclust | Source code |
| .prettysignif | Source code |
| .process_boundaries | Source code |
| .process_target_LR | Source code |
| .process_target_LR_v2.1.85 | Source code |
| .process_update_projectors | Source code |
| .qlatent | Source code |
| .qlatent_1DP | Source code |
| .qlatent_1latent_Rmixmod | Source code |
| .qlatent_1latent_mclust | Source code |
| .reduce_dMixmod | Source code |
| .reformat_bound | Source code |
| .reformat_refine_verbose | Source code |
| .remove.pairswithNas | Source code |
| .rparam_SLik_j_B_postdens | Source code |
| .rparam_SLik_j_in_out | Source code |
| .rparam_dMixmod_around_focal | Source code |
| .rparam_from_SLik | Source code |
| .safe_densityMixmod | Source code |
| .safe_init | Source code |
| .safe_tempdir | Source code |
| .sample_envelope_pts | Source code |
| .sample_filltop_pts | Source code |
| .sample_in_absol_constrs | Source code |
| .sample_profile_in_absol_constrs | Source code |
| .sample_vertices | Source code |
| .sanitize_optim_solution | Source code |
| .seekSimplex | Source code |
| .set_cluster_type | Source code |
| .shrink | Source code |
| .simVVV_rmvt | Source code |
| .simulate.MAF | Source code |
| .simulate.SGP | Source code |
| .simulate.gllimX | Source code |
| .simulate_by_row | Source code |
| .smoothEDF_s | Source code |
| .solve_t_cholfn | Source code |
| .suspectPts_by_Rmixmod | Source code |
| .suspectPts_by_mclust | Source code |
| .train_cP_size_fn | Source code |
| .trainingsize_fn | Source code |
| .update_obs | Man page Source code |
| .update_projector.SLik_j | Source code |
| .update_projector.default | Source code |
| .update_reft_raw | Source code |
| .update_seed | Source code |
| .update_timeStamps | Source code |
| .warn_once_progressr | Source code |
| .wrap_MAF | Source code |
| .wrap_MAF_cond | Source code |
| .wrap_Simulate | Source code |
| .wrap_calc_ecdf_t | Source code |
| .wrap_gllim | Source code |
| .wrap_minimize_over_nbClu | Source code |
| .wrap_rmvnorm | Source code |
| .wrap_rmvt | Source code |
| .wrap_scale | Source code |
| .wrap_update_projectors | Source code |
| Infusion | Man page |
| Infusion-package | Man page |
| Infusion.getOption | Man page |
| Infusion.options | Man page Source code |
| MAF.options | Man page Source code |
| MSL | Man page |
| NA_handling | Man page |
| NULLorChar | Man page |
| NULLorChar-class | Man page |
| NULLorNum | Man page |
| NULLorNum-class | Man page |
| SLR | Man page |
| SLRT | Man page Source code |
| `get_from.default` | Source code |
| `sample_volume` | Source code |
| `summLik.default` | Source code |
| `summary.SLikp` | Source code |
| addSimplexEq | Man page |
| add_reftable | Man page Source code |
| add_simulation | Man page Source code |
| allCIs | Man page Man page Source code |
| boundaries-attribute | Man page |
| calc.lrthreshold | Man page |
| calc.lrthreshold.SLik | Man page Source code |
| calc.lrthreshold.SLikp | Man page Source code |
| calc.lrthreshold.default | Man page Source code |
| calc_EI | Man page |
| check_logLs_input | Man page |
| check_raw_stats | Man page Source code |
| check_surface_input | Man page |
| class:NULLorChar | Man page |
| class:NULLorNum | Man page |
| class:dMixmod | Man page |
| config_mafR | Man page Source code |
| confint | Man page |
| confint.SLik | Man page Source code |
| confint.SLik_j | Man page Source code |
| confint.SLikp | Man page Source code |
| confintAll | Man page |
| confintCDF.SLik | Man page |
| constr_crits | Man page |
| constraints | Man page |
| dMixmod | Man page |
| dMixmod-class | Man page |
| declare_latent | Man page Source code |
| deforest_projectors | Man page Source code |
| densb | Man page |
| densityMixmod | Man page |
| densv | Man page |
| example_raw | Man page |
| example_raw_proj | Man page |
| example_reftable | Man page |
| extractors | Man page |
| findConstraints | Man page |
| focal_refine | Man page Source code |
| get_LRboot | Man page Source code |
| get_from | Man page Man page |
| get_from.SLik | Man page Source code |
| get_from.SLik_j | Man page |
| get_from.default | Man page |
| get_nbCluster_range | Man page Source code |
| get_projection | Man page Source code |
| get_projector | Man page Source code |
| get_workflow_design | Man page Source code |
| goftest | Man page Source code |
| handling_NAs | Man page |
| infer_LR_pvalue_from_EDF | Man page |
| infer_SLik_joint | Man page Source code |
| infer_logL_by_GLMM | Man page Source code |
| infer_logL_by_Hlscv.diag | Man page Source code |
| infer_logL_by_Rmixmod | Man page Source code |
| infer_logL_by_mclust | Man page Source code |
| infer_logLs | Man page Source code |
| infer_refDensity | Man page |
| infer_surface | Man page |
| infer_surface.default | Man page |
| infer_surface.logLs | Man page Source code |
| infer_surface.tailp | Man page Source code |
| infer_tailp | Man page Source code |
| init_grid | Man page |
| init_reftable | Man page |
| isPointInCHull | Man page |
| latint | Man page Source code |
| load_MAFs | Man page Source code |
| logLik | Man page |
| logLik.SLik | Man page Source code |
| logLik.SLik_j | Man page |
| mapMM | Man page |
| multi_binning | Man page Source code |
| myrnorm | Man page |
| neuralNet | Man page Source code |
| par_wrapper | Man page |
| parallel | Man page |
| plot.MixmodResults | Man page Source code |
| plot.SLik | Man page Source code |
| plot.SLik_j | Man page Source code |
| plot.SLikp | Man page Source code |
| plot.dMixmod | Man page Source code |
| plot1Dprof | Man page Source code |
| plot2Dprof | Man page Source code |
| plot_importance | Man page |
| plot_proj | Man page Source code |
| pplatent | Man page Source code |
| predict.MixmodResults | Man page Source code |
| predict.SLik | Man page |
| predict.SLik_j | Man page Source code |
| predict.SLikp | Man page |
| predict.dMclust | Man page Source code |
| predict.dMixmod | Man page Source code |
| predictWrap | Man page |
| Man page | |
| print.SLik | Man page Source code |
| print.SLik_j | Man page Source code |
| print.SLikp | Man page Source code |
| print.goftest | Man page Source code |
| print.logLs | Man page Source code |
| profile | Man page |
| profile.SLik | Man page Source code |
| profile.SLik_j | Man page Source code |
| project | Man page Source code |
| project.character | Man page Source code |
| project.default | Man page Man page |
| projpath | Man page |
| recluster | Man page Source code |
| refine | Man page |
| refine.SLik | Man page Source code |
| refine.SLik_j | Man page Source code |
| refine.SLikp | Man page Source code |
| refine.default | Man page Source code |
| refine_nbCluster | Man page Source code |
| reparam_fit | Man page Source code |
| reparam_reftable | Man page Source code |
| reproject | Man page Source code |
| resetCHull | Man page |
| rparam | Man page Source code |
| sample_vertices | Man page |
| sample_volume | Man page |
| save_MAFs | Man page Source code |
| saved_seed | Man page |
| seekSimplex | Man page |
| seq_nbCluster | Man page Source code |
| simulate | Man page |
| simulate.SLik_j | Man page Source code |
| smoothEDF_s | Man page |
| str.MAF | Man page Source code |
| summLik | Man page |
| summLik.SLik_j | Man page Source code |
| summLik.default | Man page |
| summary | Man page |
| summary.SLik | Man page Source code |
| summary.SLik_j | Man page |
| summary.SLikp | Man page |
| summary.goftest | Man page Source code |
| summary.logLs | Man page Source code |
