ProcessResultsAllFolds: Retrieve significant pairs, based on adjusted p-values,...

In IntLIM: Integration of Omics Data Using Linear Modeling

Retrieve significant pairs, based on adjusted p-values, interaction coefficient percentile, and r-squared values. This is a wrapper for ProcessResults.

Description

Retrieve significant pairs, based on adjusted p-values, interaction coefficient percentile, and r-squared values. This is a wrapper for ProcessResults.

Usage

ProcessResultsAllFolds(
  inputResults,
  inputData,
  pvalcutoff = 0.05,
  interactionCoeffPercentile = 0.5,
  rsquaredCutoff = 0,
  treecuts = 0
)

Arguments

inputResults	List of IntLimResults object with model results (output of RunIntLimAllFolds())
inputData	List of MultiDataSet objects (output of CreateCrossValFolds()) with analyte levels and associated meta-data
pvalcutoff	cutoff of FDR-adjusted p-value for filtering (default 0.05)
interactionCoeffPercentile	percentile cutoff for interaction coefficient (default bottom 10 percent (high negative coefficients) and top 10 percent (high positive coefficients))
rsquaredCutoff	cutoff for lowest r-squared value
treecuts	user-selected number of clusters (of pairs) to cut the tree into

Value

List of IntResults object with model results (now includes correlations)

IntLIM documentation built on Aug. 22, 2022, 5:05 p.m.