BuildDataAndLines: A helper function for the PlotPair functions (i.e. the...

In IntLIM: Integration of Omics Data Using Linear Modeling

A helper function for the PlotPair functions (i.e. the highcharter one and the flat, base-R one).

Description

A helper function for the PlotPair functions (i.e. the highcharter one and the flat, base-R one).

Usage

BuildDataAndLines(
  inputData,
  inputResults,
  outcome,
  independentVariable,
  independentAnalyteOfInterest,
  outcomeAnalyteOfInterest,
  palette = "Set1",
  stype
)

Arguments

inputData	IntLimObject output of ReadData() or FilterData()
inputResults	Data frame with model results (output of ProcessResults())
outcome	'1' or '2' must be set as outcome/independent variable
independentVariable	'1' or '2' must be set as outcome/independent variable
independentAnalyteOfInterest	independent analyte in pair
outcomeAnalyteOfInterest	outcome analyte in pair
palette	choose an RColorBrewer palette ("Set1", "Set2", "Set3", "Pastel1", "Pastel2", "Paired", etc.) or submit a vector of colors
stype	Phenotype or outcome variable

IntLIM documentation built on Aug. 22, 2022, 5:05 p.m.