ReadData: Read in CSV file

In IntLIM: Integration of Omics Data Using Linear Modeling

Read in CSV file

Description

Read in CSV file

Usage

ReadData(
  inputFile,
  analyteType1id = "id",
  analyteType2id = "id",
  logAnalyteType1 = FALSE,
  logAnalyteType2 = FALSE,
  class.feat = list(),
  suppressWarnings = FALSE
)

Arguments

inputFile	input file in CSV format (see Despcription)
analyteType1id	name of column from Analyte Type 1 meta data to be used as id (required if an Analyte Type 1 meta data file is present, must match Analyte Type 1 data)
analyteType2id	name of column from Analyte Type 2 meta data to be used as id (required if an Analyte Type 2 meta data file is present, must match Analyte Type 2 data)
logAnalyteType1	whether or not to log values for Analyte Type 1(T/F)
logAnalyteType2	whether or not to log values for Analyte Type 2(T/F)
class.feat	class ("factor" or "numeric") for each covariate. The following format is required: list(covar1="numeric", covar2="factor")
suppressWarnings	whether or not to suppress warnings

Value

IntLimData object with input data

IntLIM documentation built on Aug. 22, 2022, 5:05 p.m.