PermutationCountSummary: Return the number of significant analytes and the number of...
In IntLIM: Integration of Omics Data Using Linear Modeling
View source: R/plottingfunctions.R
PermutationCountSummary R Documentation
Return the number of significant analytes and the number
of permutations in which each analyte is significant.
If plot = TRUE, show a box plot of number of significant analytes over permutations,
overlaid with the number of significant analytes in the original data.
Description
Return the number of significant analytes and the number
of permutations in which each analyte is significant.
If plot = TRUE, show a box plot of number of significant analytes over permutations,
overlaid with the number of significant analytes in the original data.
Usage
PermutationCountSummary(inputResults, permResults, plot)
Arguments
inputResults
Data frame with model results (output of ProcessResults())
permResults
An object of type PermutationResults (output of PermuteIntLIM())
plot
Whether or not to show the boxplot. Default is TRUE.
Value
A data frame that includes, for each permutation, the number of significant
pairs and the number of unique analytes of each analyte type within those pairs
IntLIM documentation built on Aug. 22, 2022, 5:05 p.m.
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View source: R/plottingfunctions.R
| PermutationCountSummary | R Documentation |
Return the number of significant analytes and the number of permutations in which each analyte is significant. If plot = TRUE, show a box plot of number of significant analytes over permutations, overlaid with the number of significant analytes in the original data.
Description
Return the number of significant analytes and the number of permutations in which each analyte is significant. If plot = TRUE, show a box plot of number of significant analytes over permutations, overlaid with the number of significant analytes in the original data.
Usage
PermutationCountSummary(inputResults, permResults, plot)
Arguments
inputResults |
Data frame with model results (output of ProcessResults()) |
permResults |
An object of type PermutationResults (output of PermuteIntLIM()) |
plot |
Whether or not to show the boxplot. Default is TRUE. |
Value
A data frame that includes, for each permutation, the number of significant pairs and the number of unique analytes of each analyte type within those pairs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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