PermutationPairSummary: Return the number of significant analytes / pairs per...
In IntLIM: Integration of Omics Data Using Linear Modeling
View source: R/plottingfunctions.R
PermutationPairSummary R Documentation
Return the number of significant analytes / pairs per permutation and the number
of permutations in which each analyte is significant.
If plot = TRUE, show a box plot of number of significant analytes over permutations,
overlaid with the number of significant analytes in the original data.
Description
Return the number of significant analytes / pairs per permutation and the number
of permutations in which each analyte is significant.
If plot = TRUE, show a box plot of number of significant analytes over permutations,
overlaid with the number of significant analytes in the original data.
Usage
PermutationPairSummary(inputResults, permResults, plot)
Arguments
inputResults
Data frame with model results (output of ProcessResults())
permResults
An object of type PermutationResults (output of PermuteIntLIM())
plot
Whether or not to show the boxplot. Default is TRUE.
Value
A data frame that includes each significant pair from the unpermuted
data and the number of times that pair was significant in the permuted data.
IntLIM documentation built on Aug. 22, 2022, 5:05 p.m.
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View source: R/plottingfunctions.R
| PermutationPairSummary | R Documentation |
Return the number of significant analytes / pairs per permutation and the number of permutations in which each analyte is significant. If plot = TRUE, show a box plot of number of significant analytes over permutations, overlaid with the number of significant analytes in the original data.
Description
Return the number of significant analytes / pairs per permutation and the number of permutations in which each analyte is significant. If plot = TRUE, show a box plot of number of significant analytes over permutations, overlaid with the number of significant analytes in the original data.
Usage
PermutationPairSummary(inputResults, permResults, plot)
Arguments
inputResults |
Data frame with model results (output of ProcessResults()) |
permResults |
An object of type PermutationResults (output of PermuteIntLIM()) |
plot |
Whether or not to show the boxplot. Default is TRUE. |
Value
A data frame that includes each significant pair from the unpermuted data and the number of times that pair was significant in the permuted data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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