annotateTiles.md
In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

annotateTiles works on a 1 sample test dataset

Code
  SummarizedExperiment::rowRanges(STM)
Output
  GRanges object with 25112 ranges and 4 metadata columns:
                             seqnames              ranges strand |        C2
                                <Rle>           <IRanges>  <Rle> | <logical>
        chr1:1000000-1000499     chr1     1000000-1000499      * |     FALSE
      chr1:10002000-10002499     chr1   10002000-10002499      * |     FALSE
      chr1:10002500-10002999     chr1   10002500-10002999      * |      TRUE
    chr1:100026000-100026499     chr1 100026000-100026499      * |     FALSE
      chr1:10003000-10003499     chr1   10003000-10003499      * |      TRUE
                         ...      ...                 ...    ... .       ...
      chr2:99952500-99952999     chr2   99952500-99952999      * |      TRUE
      chr2:99953000-99953499     chr2   99953000-99953499      * |      TRUE
      chr2:99953500-99953999     chr2   99953500-99953999      * |      TRUE
      chr2:99954000-99954499     chr2   99954000-99954499      * |      TRUE
      chr2:99954500-99954999     chr2   99954500-99954999      * |      TRUE
                                    C5    tileType          Gene
                             <logical> <character>   <character>
        chr1:1000000-1000499      TRUE      Distal          <NA>
      chr1:10002000-10002499      TRUE    Promoter        NMNAT1
      chr1:10002500-10002999      TRUE    Promoter  NMNAT1, LZIC
    chr1:100026000-100026499      TRUE      Distal          <NA>
      chr1:10003000-10003499      TRUE    Promoter  NMNAT1, LZIC
                         ...       ...         ...           ...
      chr2:99952500-99952999      TRUE    Promoter EIF5B, TXNDC9
      chr2:99953000-99953499      TRUE    Promoter EIF5B, TXNDC9
      chr2:99953500-99953999      TRUE    Promoter EIF5B, TXNDC9
      chr2:99954000-99954499      TRUE    Promoter        TXNDC9
      chr2:99954500-99954999     FALSE    Promoter        TXNDC9
    -------
    seqinfo: 2 sequences from an unspecified genome; no seqlengths