tests/testthat/_snaps/extractRegion.md

In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

extractRegion works on a 3 sample test dataset

class: SummarizedExperiment 
dim: 80009 4 
metadata(7): summarizedData Genome ... History Type
assays(1): C3.All
rownames(80009): 1 2 ... 80008 80009
rowData names(0):
colnames(4): chr Locus Counts Groups
colData names(0):

class: SummarizedExperiment 
dim: 1001 4 
metadata(7): summarizedData Genome ... History Type
assays(1): C3.All
rownames(1001): 1 2 ... 1000 1001
rowData names(0):
colnames(4): chr Locus Counts Groups
colData names(0):

extractRegion works on a 3 sample test dataset with sampleSpecific=TRUE

class: SummarizedExperiment 
dim: 80009 4 
metadata(7): summarizedData Genome ... History Type
assays(2): C3.All.scATAC_BMMC_R1 C3.All.scATAC_CD34_BMMC_R1
rownames(80009): 1 2 ... 80008 80009
rowData names(0):
colnames(4): chr Locus Counts Groups
colData names(0):

class: SummarizedExperiment 
dim: 1001 4 
metadata(7): summarizedData Genome ... History Type
assays(1): C3.All
rownames(1001): 1 2 ... 1000 1001
rowData names(0):
colnames(4): chr Locus Counts Groups
colData names(0):

MOCHA documentation built on May 29, 2024, 2:25 a.m.