getPopFrags.md
In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

getPopFrags works for NormMethod='nCells', sampleSpecific=FALSE

[[1]]
GRanges object with 527239 ranges and 2 metadata columns:
           seqnames              ranges strand |  name                     RG
              <Rle>           <IRanges>  <Rle> | <Rle>                  <Rle>
       [1]     chr1       950413-950434      * |     1 PBMCSmall#ATGGATCCAG..
       [2]     chr1       971690-971875      * |     1 PBMCSmall#ATGGATCCAG..
       [3]     chr1       982112-982292      * |     1 PBMCSmall#ATGGATCCAG..
       [4]     chr1     1002223-1002421      * |     1 PBMCSmall#ATGGATCCAG..
       [5]     chr1     1018870-1019223      * |     1 PBMCSmall#ATGGATCCAG..
       ...      ...                 ...    ... .   ...                    ...
  [527235]     chr2 170590266-170590506      * |     1 PBMCSmall#GTTGGTACAC..
  [527236]     chr2 174829442-174829503      * |     1 PBMCSmall#GTTGGTACAC..
  [527237]     chr2 175117762-175117952      * |     1 PBMCSmall#GTTGGTACAC..
  [527238]     chr2 179343258-179343345      * |     1 PBMCSmall#GTTGGTACAC..
  [527239]     chr2 187350772-187350807      * |     1 PBMCSmall#GTTGGTACAC..
  -------
  seqinfo: 2 sequences from an unspecified genome; no seqlengths

[[2]]
GRanges object with 117146 ranges and 2 metadata columns:
           seqnames              ranges strand |  name                     RG
              <Rle>           <IRanges>  <Rle> | <Rle>                  <Rle>
       [1]     chr1       569395-569437      * |     1 PBMCSmall#TATCTGTAGA..
       [2]     chr1       954587-954792      * |     1 PBMCSmall#TATCTGTAGA..
       [3]     chr1       958479-958544      * |     1 PBMCSmall#TATCTGTAGA..
       [4]     chr1       958896-959278      * |     1 PBMCSmall#TATCTGTAGA..
       [5]     chr1     1051480-1051702      * |     1 PBMCSmall#TATCTGTAGA..
       ...      ...                 ...    ... .   ...                    ...
  [117142]     chr2 194266094-194266282      * |     1 PBMCSmall#ACTATTCGTT..
  [117143]     chr2 194274023-194274204      * |     1 PBMCSmall#ACTATTCGTT..
  [117144]     chr2 194311044-194311244      * |     1 PBMCSmall#ACTATTCGTT..
  [117145]     chr2 194324819-194325051      * |     1 PBMCSmall#ACTATTCGTT..
  [117146]     chr2 194325160-194325198      * |     1 PBMCSmall#ACTATTCGTT..
  -------
  seqinfo: 2 sequences from an unspecified genome; no seqlengths

[[3]]
GRanges object with 399301 ranges and 2 metadata columns:
           seqnames              ranges strand |  name                     RG
              <Rle>           <IRanges>  <Rle> | <Rle>                  <Rle>
       [1]     chr1       894697-894824      * |     1 PBMCSmall#CATGCCTCAT..
       [2]     chr1       954937-955019      * |     1 PBMCSmall#CATGCCTCAT..
       [3]     chr1       954937-955091      * |     1 PBMCSmall#CATGCCTCAT..
       [4]     chr1       957091-957296      * |     1 PBMCSmall#CATGCCTCAT..
       [5]     chr1       975876-976181      * |     1 PBMCSmall#CATGCCTCAT..
       ...      ...                 ...    ... .   ...                    ...
  [399297]     chr2 191512958-191513112      * |     1 PBMCSmall#CCGTAGGGTG..
  [399298]     chr2 191879171-191879586      * |     1 PBMCSmall#CCGTAGGGTG..
  [399299]     chr2 191887431-191887948      * |     1 PBMCSmall#CCGTAGGGTG..
  [399300]     chr2 191887951-191888026      * |     1 PBMCSmall#CCGTAGGGTG..
  [399301]     chr2 192543086-192543499      * |     1 PBMCSmall#CCGTAGGGTG..
  -------
  seqinfo: 2 sequences from an unspecified genome; no seqlengths

[[4]]
GRanges object with 463493 ranges and 2 metadata columns:
           seqnames              ranges strand |  name                     RG
              <Rle>           <IRanges>  <Rle> | <Rle>                  <Rle>
       [1]     chr1       714131-714155      * |     1 PBMCSmall#CACATGAAGG..
       [2]     chr1       714131-714262      * |     1 PBMCSmall#CACATGAAGG..
       [3]     chr1       715395-715620      * |     1 PBMCSmall#CACATGAAGG..
       [4]     chr1       725081-725229      * |     1 PBMCSmall#CACATGAAGG..
       [5]     chr1       755667-755875      * |     1 PBMCSmall#CACATGAAGG..
       ...      ...                 ...    ... .   ...                    ...
  [463489]     chr2 172750820-172750851      * |     1 PBMCSmall#ATCCAGACAG..
  [463490]     chr2 176032841-176032957      * |     1 PBMCSmall#ATCCAGACAG..
  [463491]     chr2 177051768-177052025      * |     1 PBMCSmall#ATCCAGACAG..
  [463492]     chr2 181597759-181597963      * |     1 PBMCSmall#ATCCAGACAG..
  [463493]     chr2 192071131-192071418      * |     1 PBMCSmall#ATCCAGACAG..
  -------
  seqinfo: 2 sequences from an unspecified genome; no seqlengths

[[5]]
GRanges object with 171033 ranges and 2 metadata columns:
           seqnames              ranges strand |  name                     RG
              <Rle>           <IRanges>  <Rle> | <Rle>                  <Rle>
       [1]     chr1       907512-907720      * |     1 PBMCSmall#TAATCGGGTT..
       [2]     chr1       913770-914107      * |     1 PBMCSmall#TAATCGGGTT..
       [3]     chr1       976218-976261      * |     1 PBMCSmall#TAATCGGGTT..
       [4]     chr1     1208211-1208374      * |     1 PBMCSmall#TAATCGGGTT..
       [5]     chr1     1334766-1334874      * |     1 PBMCSmall#TAATCGGGTT..
       ...      ...                 ...    ... .   ...                    ...
  [171029]     chr2 190526221-190526386      * |     1 PBMCSmall#TTCGATTTCG..
  [171030]     chr2 191513626-191513711      * |     1 PBMCSmall#TTCGATTTCG..
  [171031]     chr2 192542651-192542779      * |     1 PBMCSmall#TTCGATTTCG..
  [171032]     chr2 192558035-192558078      * |     1 PBMCSmall#TTCGATTTCG..
  [171033]     chr2 193880209-193880421      * |     1 PBMCSmall#TTCGATTTCG..
  -------
  seqinfo: 2 sequences from an unspecified genome; no seqlengths