subsetMOCHAObject.md
In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

We can subset a sampleTileMatrix object - and peaks - by celltypes

class: RangedSummarizedExperiment 
dim: 11360 3 
metadata(6): summarizedData Genome ... Directory History
assays(1): C3
rownames(11360): chr10:100080500-100080999 chr10:100147000-100147499
  ... chrY:2709500-2709999 chrY:2803000-2803499
rowData names(2): C2 C3
colnames(3): scATAC_BMMC_R1 scATAC_CD34_BMMC_R1 scATAC_PBMC_R1
colData names(2): Sample PassQC

class: SummarizedExperiment 
dim: 1 3 
metadata(0):
assays(16): CellCounts FragmentCounts ... DoubletEnrichment
  BlacklistRatio
rownames(1): C3
rowData names(0):
colnames(3): scATAC_BMMC_R1 scATAC_CD34_BMMC_R1 scATAC_PBMC_R1
colData names(2): Sample PassQC