singlePopulationSampleTileMatrix: 'singlePopulationSampleTileMatrix'

In MOCHA: Modeling for Single-Cell Open Chromatin Analysis

singlePopulationSampleTileMatrix

Description

singlePopulationSampleTileMatrix is a function that can transform a set of tile intensities into peak X sample matrix for a custom set of tiles

Usage

singlePopulationSampleTileMatrix(
  peaksExperiment,
  consensusTiles,
  NAtoZero = FALSE
)

Arguments

peaksExperiment	peakset RaggedExperiment, one celltype from the output of callOpenTiles
consensusTiles	a vector containing the tileIDs to subset the sample-tile matrix

Details

The technical details of the algorithm are found in XX.

Value

sampleTileIntensityMat a sample X peak matrix containing observed measurements for each sample at each peak.

References

XX

MOCHA documentation built on May 29, 2024, 2:25 a.m.