mkGenABELphenotype: generate required PLINK (.phe) file
In Mega2R: Accessing and Processing a 'Mega2' Genetic Database
Description
Usage
Arguments
Value
Examples
Description
Generate the .phe (PLINK phenotype) file needed by GenAbel. The person
must match that specified in the .tfam file
Usage
1
mkGenABELphenotype(envir)
Arguments
envir
'environment' containing SQLite database and other globals
Value
out phenotype data frame
Examples
1
2
3
4
5
6
## Not run:
db = system.file("exdata", "seqsimm.db", package="Mega2R")
ENV = read.Mega2DB(db)
mkGenABELphenotype(ENV)
## End(Not run)
Mega2R documentation built on Dec. 11, 2021, 9:12 a.m.
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Description Usage Arguments Value Examples
Description
Generate the .phe (PLINK phenotype) file needed by GenAbel. The person must match that specified in the .tfam file
Usage
1 | mkGenABELphenotype(envir)
|
Arguments
envir |
'environment' containing SQLite database and other globals |
Value
out phenotype data frame
Examples
1 2 3 4 5 6 | ## Not run:
db = system.file("exdata", "seqsimm.db", package="Mega2R")
ENV = read.Mega2DB(db)
mkGenABELphenotype(ENV)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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