mkVCFfreq: generate required VCF frequency (.freq) file

In Mega2R: Accessing and Processing a 'Mega2' Genetic Database

Description

Generate the initial boiler plate VCF, then generate ##INFO entries for each entry tag. Finally, generate the ##contig entries for each chromosome.

Usage

mkVCFfreq(prefix, markers, recode = FALSE, envir)

Arguments

prefix	prefix for .freq file (frequency)
markers	data.frame of markers being processed
recode	use 1/2 instead of two given alleles (eg. A/C)
envir	"environment" containing SQLite database and other globals

Value

None

Examples

## Not run: 
mkVCFfreq(prefix, NULL, FALSE, envir)

## End(Not run)

Mega2R documentation built on Dec. 11, 2021, 9:12 a.m.