mkVCFfreq: generate required VCF frequency (.freq) file
In Mega2R: Accessing and Processing a 'Mega2' Genetic Database
mkVCFfreq R Documentation
generate required VCF frequency (.freq) file
Description
Generate the initial boiler plate VCF, then generate ##INFO entries for each entry tag.
Finally, generate the ##contig entries for each chromosome.
Usage
mkVCFfreq(prefix, markers, recode = FALSE, envir)
Arguments
prefix
prefix for .freq file (frequency)
markers
data.frame of markers being processed
recode
use 1/2 instead of two given alleles (eg. A/C)
envir
"environment" containing SQLite database and other globals
Value
None
Examples
## Not run:
mkVCFfreq(prefix, NULL, FALSE, envir)
## End(Not run)
Mega2R documentation built on May 29, 2024, 1:14 a.m.
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| mkVCFfreq | R Documentation |
generate required VCF frequency (.freq) file
Description
Generate the initial boiler plate VCF, then generate ##INFO entries for each entry tag. Finally, generate the ##contig entries for each chromosome.
Usage
mkVCFfreq(prefix, markers, recode = FALSE, envir)
Arguments
prefix |
prefix for .freq file (frequency) |
markers |
data.frame of markers being processed |
recode |
use 1/2 instead of two given alleles (eg. A/C) |
envir |
"environment" containing SQLite database and other globals |
Value
None
Examples
## Not run:
mkVCFfreq(prefix, NULL, FALSE, envir)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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