Mendelian Randomization Package

calcium | Data on effect of calcium on fasting glucose (correlated... |

ci_normal | Calculate confidence intervals using the normal distribution |

ci_t | Calculate confidence intervals using the t-distribution |

coursedata | Course data |

decimals | Produce nicely rounded numbers |

egger.bounds | Calculates confidence intervals for the MR-Egger method |

Egger-class | Egger Class |

extract.pheno.csv | Extract summarized data from a PhenoScanner .csv file... |

getter | Applies method $ to different classes |

het.weight | Heterogeneity-penalized weight function |

IVW-class | IVW Class |

ldlc | Data on lipid effects on coronary artery disease... |

loglikelihood | Calculates log-likelihood with uncorrelated variants in... |

loglikelihoodcorrel | Calculates log-likelihood with correlated variants in... |

loglikelihoodrhocorrel | Calculates log-likelihood with correlation from sample... |

MaxLik-class | MaxLik Class |

mbe_boot | Mode-based estimate (Hartwig) bootstrap function |

mbe_est | Mode-based estimate (Hartwig) estimation function |

model.prior | Prior weight function |

MRAll-class | MRAll Class |

mr_allmethods | Mendelian randomization estimation using all methods |

mr_conmix | Contamination mixture method |

MRConMix-class | MRConMix Class |

mr_egger | MR-Egger method |

mr_hetpen | Heterogeneity-penalized method |

MRHetPen-class | MRHetPen Class |

mr_input | Inputting and formatting data for use in causal estimation |

MRInput-class | MRInput Class |

mr_ivw | Inverse-variance weighted method |

mr_maxlik | Maximum-likelihood method |

mr_mbe | Mode-based method of Hartwig |

MRMBE-class | MRMBE Class |

mr_median | Median-based method |

mr_mvegger | Multivariable MR-Egger method |

mr_mvinput | Inputting and formatting data for use in causal estimation |

MRMVInput-class | MRMVInput Class |

mr_mvivw | Multivariable inverse-variance weighted method |

mr_plot | Draw a scatter plot of the genetic associations and/or causal... |

MVEgger-class | MVEgger Class |

MVIVW-class | MVIVW Class |

penalised.weights | Calculates p-values for penalization of weights |

penalised.weights.delta | Calculates p-values for penalization of weights with... |

pheno_input | Extract summarized data from PhenoScanner |

phenoscanner | PhenoScanner |

r.weights | Calculates p-values for penalization of weights |

r.weights.delta | Calculates p-values for penalization of weights with... |

simpleCap | Capitalize a word |

values | Applies method values() to different output classes |

weighted.median | Weighted median function |

weighted.median.boot.se | Weighted median standard error function |

WeightedMedian-class | WeightedMedian Class |

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