immunoStatesGenePropCorr: Correct gene expression using cell proportions from...

In MetaIntegrator: Meta-Analysis of Gene Expression Data

Description

Correct gene expression using cell proportions from immunoStates

Usage

immunoStatesGenePropCorr(metaObject)

Arguments

metaObject

a MetaIntegrator formatted Meta object.

Value

Results from immunoStates gene proportion correction on the MetaIntegrator object are stored in $iScorrExp of the original Meta object

Author(s)

Francesco Vallania copyright by Francesco Vallania

Examples

## Not run: 
# Example won't work on tinyMetaObject because it requires real gene names
# Download the needed datasets for processing. 
sleData <- getGEOData(c("GSE11909","GSE50635", "GSE39088"))

# Run immunoStates
immunoStatesCorrected <- immunoStateGenePropCorr(sleData)

## End(Not run)

MetaIntegrator documentation built on March 26, 2020, 6:29 p.m.