Files in MetaIntegrator
Meta-Analysis of Gene Expression Data
MD5
README.md
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/tinyMetaObject.RData
data/ucsc_genbank_table.rda
data/datalist
data/immunoStatesMatrix.RData
data/ucsc_refseq_table.rda
data/ens_ensgID_table.rda
data/ens_entrez_table.rda
R/coconutMetaIntegrator.R
R/multiplePRCPlot.R
R/imputeSex.R
R/classFunction.R
R/violinPlot.R
R/pooledROCplot.R
R/calculatePower.R
R/heatmapPlot.R
R/subsetOriginalData.R
R/predvalPlot.R
R/getGEOData.R
R/calculateScore.R
R/cleanUpPheno.R
R/regressionPlot.R
R/immunoStatesMeta.R
R/filterGenes.R
R/checkDataObject_functions.R
R/immunoStates.R
R/multipleROCPlot.R
R/ggForestPlot.R
R/geneSymbolCorrection.R
R/summarizeFilterResults.R
R/metaAnalysis.R
R/getSampleLevelGeneData.R
R/manhattanPlot.R
R/summaryROCPlot.R
R/lincsTools.R
R/prcPlot.R
R/ROC_and_search_functions.R
R/forestPlot.R
R/checkDataObject.R
R/getMostRecentFilter.R
R/metaAnalysisFoundation.R
R/runMetaAnalysis.R
vignettes/MetaIntegratorRealExample.Rmd
vignettes/MetaIntegrator.Rmd
vignettes/images/schema_simplified2.png
vignettes/images/Eq2.png
vignettes/images/Eq1.png
vignettes/images/schema_simplified.pdf
vignettes/images/Eq4.png
vignettes/images/Eq3.png
man/getGEOData.Rd
man/imputeSex.Rd
man/summarizeFilterResults.Rd
man/lincsCorrelate.Rd
man/violinPlot.Rd
man/manhattanPlot.Rd
man/ens_entrez_table.Rd
man/forwardSearch.Rd
man/multipleROCPlot.Rd
man/metaIntegrator_public-package.Rd
man/immunoStatesMeta.Rd
man/runMetaAnalysis.Rd
man/lincsBaitCorr.Rd
man/immunoStatesDecov.Rd
man/backwardSearch.Rd
man/calculateScore.Rd
man/forestPlot.Rd
man/subsetOriginalData.Rd
man/calcMetaPower.Rd
man/cleanUpPheno.Rd
man/rocPlot.Rd
man/ggForestPlot.Rd
man/prcPlot.Rd
man/checkDataObject.Rd
man/immunoStatesGenePropCorr.Rd
man/coconutMetaIntegrator.Rd
man/lincsTools.Rd
man/getSampleLevelGeneData.Rd
man/getMostRecentFilter.Rd
man/heatmapPlot.Rd
man/predvalPlot.Rd
man/multiplePRCPlot.Rd
man/pooledROCPlot.Rd
man/ens_ensgID_table.Rd
man/ucsc_genbank_table.Rd
man/calculateROC.Rd
man/filterGenes.Rd
man/summaryROCPlot.Rd
man/immunoStatesMatrix.Rd
man/ucsc_refseq_table.Rd
man/regressionPlot.Rd
man/classFunction.Rd
man/tinyMetaObject.Rd
man/summaryROCCalc.Rd
man/geneSymbolCorrection.Rd
tests/runTests.R
inst/lincsReport.Rmd
inst/CITATION
inst/doc/MetaIntegratorRealExample.html
inst/doc/MetaIntegratorRealExample.Rmd
inst/doc/MetaIntegrator.R
inst/doc/MetaIntegrator.Rmd
inst/doc/MetaIntegrator.html
inst/unitTests/test_violinPlot.R
inst/unitTests/test_rocPlot.R
inst/unitTests/test_getMostRecentFilter.R
inst/unitTests/test_checkDataObject.R
inst/unitTests/test_calculateROC.R
inst/unitTests/test_getSampleLevelGeneData.R
inst/unitTests/test_runMetaAnalysis.R
inst/unitTests/test_summarizeFilterResults.R
inst/unitTests/test_backwardSearch.R
inst/unitTests/test_forestPlot.R
inst/unitTests/test_filterGenes.R
inst/unitTests/test_forwardSearch.R
inst/unitTests/test_calculateScore.R
inst/unitTests/testOutput/temp.temp
inst/unitTests/goldStandardOutput/rocPlots.pdf
inst/unitTests/goldStandardOutput/forestPlots.pdf
inst/unitTests/goldStandardOutput/violinPlots.pdf
