mappingInfo: mappingInfo sequence analysis of contigs (for SIMULATION...
In MetamapsDB: Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics
Description
Usage
Arguments
Examples
Description
Used for mapping short reads against contigs using blast
Usage
1
mappingInfo(koi = "K00927", doBlast = FALSE, ...)
Arguments
koi
the KO of interest
doBlast
read from file or carry out blast
...
root, outputDir, query, rangesFile, genomesFile, blastFile
Examples
1
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5
## Not run:
blastfile = "~/simulation_fr_the_beginning/reAssemble/everybodyelse/out/simBlast/K00927/blast.tsv"
mappingInfo(blastfile, doBlast=FALSE)
## End(Not run)
MetamapsDB documentation built on May 1, 2019, 9:23 p.m.
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Description Usage Arguments Examples
Description
Used for mapping short reads against contigs using blast
Usage
1 | mappingInfo(koi = "K00927", doBlast = FALSE, ...)
|
Arguments
koi |
the KO of interest |
doBlast |
read from file or carry out blast |
... |
root, outputDir, query, rangesFile, genomesFile, blastFile |
Examples
1 2 3 4 5 | ## Not run:
blastfile = "~/simulation_fr_the_beginning/reAssemble/everybodyelse/out/simBlast/K00927/blast.tsv"
mappingInfo(blastfile, doBlast=FALSE)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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