Files in MetamapsDB
Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics
MD5
DESCRIPTION
README.md
NAMESPACE
inst/python/simBlast
inst/python/__init__.py
inst/python/simBlast.py
inst/taxonomy/README
inst/perl/createSQL.pl
R/grepgraph.R
R/koname.R
R/setCypher.R
R/taxonname.R
R/contigInfo.R
R/data.R
R/contractMetab.R
R/lca.R
R/mdrMapping.R
R/sqlTaxid.R
R/findHomology.R
R/threshold.R
R/mapping.R
R/path2kingdom.R
R/setNodeProperties.R
R/igraph2gexf.R
R/annotate.R
R/utils.R
R/graphgraph_cpd.R
R/listquery.R
R/adjacentPairs.R
R/prettifyGraph.R
R/trio.R
R/path2ko.R
R/dbquery.R
R/grepgraph_cpd.R
R/pathways.R
R/drawTaxonomicTree.R
R/trioAnalysis.R
R/findSeeds.R
R/cpdname.R
R/trio.local.R
R/weird.R
R/makedata.frame.R
R/ig2ggplot.R
man/grepReads.Rd
man/listquery.Rd
man/grepgraph.cpd.Rd
man/buildE.Rd
man/path2kingdom.Rd
man/lca.Rd
man/path2ko.Rd
man/grepgraph.Rd
man/connect.Rd
man/mapContig.Rd
man/simpleThres.Rd
man/findPython.Rd
man/pathways.Rd
man/findPerl.Rd
man/addKOProperty.Rd
man/findTrios.Rd
man/contigsSurvive.repeats.readNum.Rd
man/findSeeds.Rd
man/findHomology.Rd
man/doublepipe.Rd
man/scg.Rd
man/index.Rd
man/allTrios.Rd
man/annotateContigs.taxonomy.Rd
man/mdrRanges.Rd
man/contigsSurvive.repeats.rpk.Rd
man/rolling.Rd
man/ksCal.Rd
man/taxnam.sql.Rd
man/grep.cDNA.Rd
man/findtype.Rd
man/dollarpipe.Rd
man/categorize.Rd
man/addContigProperty.Rd
man/taxname.Rd
man/lookupTable.Rd
man/extractFromPath.Rd
man/top500kos.Rd
man/mappingInfo.Rd
man/ko2path.Rd
man/dbquery.Rd
man/make.data.frame.Rd
man/buildTree.Rd
man/map.Rd
man/findV.Rd
man/readStatusReader.Rd
man/adjacentPairs.Rd
man/dynPlots.Rd
man/simulated.Rd
man/igraph2gexf.Rd
man/prettifyGraph.Rd
man/pipe.Rd
man/koname.Rd
man/plotClassification.Rd
man/dynamicThreshold.Rd
man/nitrogenMetab.Rd
man/contractMetab.Rd
man/grepgraph_cpd.Rd
man/cpdname.Rd
man/findNextKO.Rd
man/findK.Rd
man/mapReads2MDR.Rd
man/surrNODES.Rd
man/contigInfo.Rd
man/ig2ggplot.Rd
man/blatting.Rd
data/singleCopyGenes.rda
data/top500kos.rda
data/nitrogenGraph.rda
