buildTree: Taxonomic tree of the taxons

In MetamapsDB: Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

Description

'buildTree' Returns taxonomic tree as a igraphObject of the taxids up to phylum

Usage

buildTree(taxids = c(287, 280), standardisedRanks = c("superkingdom",
  "phylum", "class", "order", "family", "genus", "species"))

Arguments

taxids	vector of leave nodes
standardisedRanks	the ranks to report. superkingdom phylum class order family genus species

Examples

## Not run: 
standardisedRanks  = c("superkingdom", "phylum", "class", "order","family", "genus", "species")
buildTree(taxids = c(287, 280), standardisedRanks )

## End(Not run)

MetamapsDB documentation built on May 1, 2019, 9:23 p.m.