API for MetamapsDB
Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

Global functions
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addContigProperty Man page Source code
addKOProperty Man page Source code
adjacentPairs Man page Source code
allTrios Man page Source code
annotateContigs.taxonomy Man page Source code
blatting Man page Source code
buildE Man page Source code
buildTree Man page Source code
categorize Man page Source code
connect Man page Source code
contigInfo Man page Source code
contigsSurvive.repeats.readNum Man page Source code
contigsSurvive.repeats.rpk Man page Source code
contractMetab Man page Source code
cpdname Man page Source code
dbquery Man page Source code
dynPlots Man page Source code
dynamicThreshold Man page Source code
extractFromPath Man page Source code
findHomology Man page Source code
findK Man page Source code
findNextKO Man page Source code
findPerl Man page Source code
findPython Man page Man page Source code Source code
findSeeds Man page Source code
findTrios Man page Source code
findV Man page Source code
findtype Man page Source code
grep.cDNA Man page Source code
grepReads Man page Source code
grepgraph Man page Source code
grepgraph.cpd Man page Source code
grepgraph_cpd Man page Source code
ig2ggplot Man page Source code
igraph2gexf Man page Source code
index Man page Source code
ko2path Man page Source code
koname Man page Source code
ksCal Man page Source code
lca Man page Source code
lca2 Source code
listquery Man page Source code
lookupTable Man page Source code
make.data.frame Man page Source code
map Man page Source code
mapContig Man page Source code
mapReads2MDR Man page Source code
mappingInfo Man page Source code
mdrRanges Man page Source code
nitrogenMetab Man page
path2kingdom Man page Source code
path2ko Man page Source code
pathways Man page Source code
plotClassification Man page Source code
prettifyGraph Man page Source code
readStatusReader Man page Source code
rolling Man page Source code
scg Man page
simpleThres Man page Source code
simulated Man page Source code
surrNODES Man page Source code
taxnam.sql Man page Source code
taxname Man page Source code
top500kos Man page
MetamapsDB documentation built on Dec. 6, 2017, 5:03 p.m.