prettifyGraph: returns metabolic graph with all the ornaments set Adds...

In MetamapsDB: Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

Description

returns metabolic graph with all the ornaments set Adds details into the igraph object

Usage

prettifyGraph(g, vsize = c(1, 2), vcolor = c("grey", "red"),
  withText = TRUE, vtext = c(0.5, 1), layout = FALSE)

Arguments

g	igraph Object
vsize	the vertex size
vcolor	length 2 vector for KO and compounds
withText	Conditional to include labels in
vtext	two vector text valuevsize
layout	Whether to calculate the layoutvcolor

Examples

p = nitrogenMetab %>% prettifyGraph %>% ig2ggplot(., dfOnly=FALSE)
p

MetamapsDB documentation built on May 1, 2019, 9:23 p.m.