rolling: rolling A dynamic threshold for the killing redundant contigs
In MetamapsDB: Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics
Description
outputs a data.frame with 2 columns 1.) rollingMean 2.) meanDepth
Usage
1
rolling(keptDF, wind = 15, interval = 10)
Arguments
keptDF
dataframe for the #repeats left after thresholding, columnnames thresholds, repeats
wind
window size
interval
interval size
MetamapsDB documentation built on May 1, 2019, 9:23 p.m.
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Description
outputs a data.frame with 2 columns 1.) rollingMean 2.) meanDepth
Usage
1 | rolling(keptDF, wind = 15, interval = 10)
|
Arguments
keptDF |
dataframe for the #repeats left after thresholding, columnnames thresholds, repeats |
wind |
window size |
interval |
interval size |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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