get.snapshot.single: Derive snapshot of selected individuals

In MoBPS: Modular Breeding Program Simulator

Derive snapshot of selected individuals

Description

Function to derive snapshot of genotyping/phenotyping state of selected individuals

Usage

get.snapshot.single(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  id = NULL,
  phenotype.data = FALSE,
  gain.data = FALSE,
  digits = 3,
  time.diff = 1,
  min.time = -Inf,
  max.time = Inf,
  use.all.copy = TRUE,
  verbose = TRUE,
  time.points = NULL,
  include.culled = FALSE
)

Arguments

population	Population list
database	Groups of individuals to consider for the export
gen	Quick-insert for database (vector of all generations to export)
cohorts	Quick-insert for database (vector of names of cohorts to export)
id	Individual IDs to search/collect in the database
phenotype.data	Set to TRUE to include information of number of phenotypes generated
gain.data	Set to TRUE to add information on changes in genetic level between cohorts (default: FALSE)
digits	Number of digits provided for the gain.data output (default: 3)
time.diff	Set to a target time interval to receive information between transitions to other cohorts (default: NA)
min.time	Earliest time point relevant for output results (default: -Inf)
max.time	Latest time point relevant for output results (default: Inf)
use.all.copy	Set to TRUE to extract phenotyping
verbose	Set to FALSE to not display any prints (default: TRUE)
time.points	Use this parameter to manual provide a vector of time points on results should be generated for (default: NULL)
include.culled	Set to TRUE to also include culled individuals in the statistics provided

Value

Snapshot Matrix

Examples

data(ex_pop)
get.snapshot.single(ex_pop, cohorts = "Cohort_2_M")

MoBPS documentation built on Nov. 5, 2025, 6:26 p.m.