insert.pheno: Manually enter phenotypes

In MoBPS: Modular Breeding Program Simulator

Manually enter phenotypes

Description

Function to manually enter phenotypes

Usage

insert.pheno(
  population,
  phenos,
  na.override = FALSE,
  count = 1,
  count.only.increase = TRUE
)

Arguments

population	Population list
phenos	Matrix of phenotypes to enter (one row per individual with 1 element coding individual name)
na.override	Set to TRUE to also enter NA values (Default: FALSE - those entries will be skipped)
count	Counting for economic cost calculation (default: 1 - (one observation (for "pheno"), one genotyping (for "bve")))
count.only.increase	Set to FALSE to reduce the number of observation for a phenotype to "count" (default: TRUE)

Value

Population-List with newly entered phenotypes

Examples

data(ex_pop)
bv <- get.bv(ex_pop, gen=2, use.id = FALSE)
new.bve <- cbind( colnames(bv), bv[,1]) ## Unrealistic but you do not get better than this!
ex_pop <- insert.pheno(ex_pop, phenos=new.bve)

MoBPS documentation built on Nov. 5, 2025, 6:26 p.m.