PAC: Partition-Assisted Clustering and Multiple Alignments of Networks

Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.

Install the latest version of this package by entering the following in R:
install.packages("PAC")
AuthorYe Henry Li, Dangna Li
Date of publication2017-03-10 23:51:10
MaintainerYe Henry Li <ywli@stanford.edu>
LicenseGPL-3
Version1.0.7

View on CRAN

Functions

aggregateData Man page
annotateClades Man page
annotationMatrix_withSubpopProp Man page
BSPLeaveCenter Man page
fmeasure Man page
getRepresentativeNetworks Man page
heatmapInput Man page
JaccardSM Man page
MAN Man page
MINetwork_matrix_topEdges Man page
MINetworkPlot_topEdges Man page
MINetwork_simplified_topEdges Man page
outputNetworks_topEdges_matrix Man page
outputRepresentativeNetworks_topEdges Man page
PAC Man page
refineSubpopulationLabels Man page
samplePass Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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