PAC: Partition-Assisted Clustering

Implements Partition-Assisted Clustering, which utilizes a collection of partition based nonparametric density estimation techniques to improve the robustness and accuracy of downstream clustering. The package also provides functions for effectively visualizing the clustering results. It is particularly useful for finding and visualizing subpopulations in single-cell data analysis.

AuthorDangna Li, Henry Li
Date of publication2016-04-10 16:25:22
MaintainerDangna Li <ldangna@gmail.com>
LicenseGPL-3
Version1.0.5

View on CRAN

Files in this package

PAC
PAC/inst
PAC/inst/doc
PAC/inst/doc/intro.html
PAC/inst/doc/intro.R
PAC/inst/doc/intro.Rmd
PAC/src
PAC/src/Makevars
PAC/src/bsp.h
PAC/src/util.cc
PAC/src/pac-wrapper.cc
PAC/src/util.h
PAC/src/bspconst.h
PAC/src/bsp.cc
PAC/src/RcppExports.cpp
PAC/src/type.h
PAC/NAMESPACE
PAC/R
PAC/R/PAC.R PAC/R/makeList.R PAC/R/signalLevelHeatmap.R PAC/R/filteredResults_JSON.R PAC/R/aggregateData.R PAC/R/RcppExports.R PAC/R/packedCircleInput.R PAC/R/clusterPropHeatmap.R PAC/R/fmeasure.R PAC/R/clusterNames.R
PAC/vignettes
PAC/vignettes/CyTOFData.txt
PAC/vignettes/subpop_names_top2.txt
PAC/vignettes/intro.Rmd
PAC/vignettes/references.bib
PAC/vignettes/bioexample.html
PAC/vignettes/zoomablePackedCirclesInput.txt
PAC/vignettes/bioexample.Rmd
PAC/MD5
PAC/build
PAC/build/vignette.rds
PAC/DESCRIPTION
PAC/man
PAC/man/PAC.Rd PAC/man/clusterNames.Rd PAC/man/BSPLeaveCenter.Rd PAC/man/clusterPropHeatmap.Rd PAC/man/makeList.Rd PAC/man/packedCircleInput.Rd PAC/man/fmeasure.Rd PAC/man/signalLevelHeatmap.Rd PAC/man/filteredResults_JSON.Rd PAC/man/aggregateData.Rd
PAC/configure.win
PAC/cleanup.win

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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