outputRepresentativeNetworks_topEdges: Outputs the representative/clade networks (plots and summary...
In PAC: Partition-Assisted Clustering and Multiple Alignments of Networks
View source: R/outputRepresentativeNetworks_topEdges.R
Description
Outputs the representative/clade networks (plots and summary vectors) for subpopulations with size larger than a desired threshold. Saves the networks and the data matrices without the smaller subpopulations.
Usage
1
2
outputRepresentativeNetworks_topEdges(dataMatrix, subpopulationLabels,
threshold)
Arguments
dataMatrix
data matrix with first column being the sample ID
subpopulationLabels
the subpopulation labels
threshold
the number of edges to draw for each subpopulation mutual information network
PAC documentation built on Feb. 18, 2021, 9:06 a.m.
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View source: R/outputRepresentativeNetworks_topEdges.R
Description
Outputs the representative/clade networks (plots and summary vectors) for subpopulations with size larger than a desired threshold. Saves the networks and the data matrices without the smaller subpopulations.
Usage
1 2 | outputRepresentativeNetworks_topEdges(dataMatrix, subpopulationLabels,
threshold)
|
Arguments
dataMatrix |
data matrix with first column being the sample ID |
subpopulationLabels |
the subpopulation labels |
threshold |
the number of edges to draw for each subpopulation mutual information network |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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